Atauschii AET2Gv20249500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20249500 [ AET2Gv20249500] |
2D | 73878889 | 73884113 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20249500.11 AET2Gv20249500.11 |
Low | No | 473 | OG0024570 | Get ORF Coding potential... Type: noncoding Potential: -0.143 Folding energies... MFEI: -29.070 AMFE: -0.619 GC content %: 46.934 | |
| Atauschii_AET2Gv20249500.14 AET2Gv20249500.14 |
Low | No | 668 | OG0024570 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -25.853 AMFE: -0.615 GC content %: 42.066 | |
| Atauschii_AET2Gv20249500.17 AET2Gv20249500.17 |
Low | No | 1356 | OG0024571 | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -25.855 AMFE: -0.642 GC content %: 40.265 | |
| Atauschii_AET2Gv20249500.22 AET2Gv20249500.22 |
Low | No | 847 | OG0024571 | Get ORF Coding potential... Type: noncoding Potential: -0.183 Folding energies... MFEI: -26.423 AMFE: -0.641 GC content %: 41.204 | |
| Atauschii_AET2Gv20249500.23 AET2Gv20249500.23 |
High | No | 699 | OG0069948 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -22.546 AMFE: -0.611 GC content %: 36.910 | |
| Atauschii_AET2Gv20249500.8 AET2Gv20249500.8 |
High | No | 1296 | OG0069949 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.591 AMFE: -0.667 GC content %: 44.367 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20249500.11 | SwissProt | 2021-04-01 | P0AAD4 | 2.72e-14 |
| Atauschii_AET2Gv20249500.14 | SwissProt | 2021-04-01 | P0AAD4 | 8.24e-8 |
| Atauschii_AET2Gv20249500.17 | SwissProt | 2021-04-01 | Q02DS7 | 2.4e-11 |
| Atauschii_AET2Gv20249500.22 | SwissProt | 2021-04-01 | Q02DS7 | 1.13e-11 |
| Atauschii_AET2Gv20249500.22 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
