GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20250100 [ AET2Gv20250100]	2D	74149977	74152401	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20250100.1 AET2Gv20250100.1	High	No	879	OG0002342		Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -30.922 AMFE: -0.588 GC content %: 52.560
Atauschii_AET2Gv20250100.2 AET2Gv20250100.2	High	No	1144	OG0002342		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -28.881 AMFE: -0.593 GC content %: 48.689
Atauschii_AET2Gv20250100.3 AET2Gv20250100.3	High	No	311	OG0001285		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -40.225 AMFE: -0.569 GC content %: 70.740

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).