Atauschii AET2Gv20250900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20250900 [ AET2Gv20250900] |
2D | 74396168 | 74399209 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20250900.11 AET2Gv20250900.11 |
Low | Yes | 1623 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -29.729 AMFE: -0.682 GC content %: 43.561 | |
| Atauschii_AET2Gv20250900.12 AET2Gv20250900.12 |
Low | Yes | 2092 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -27.930 AMFE: -0.644 GC content %: 43.356 | |
| Atauschii_AET2Gv20250900.18 AET2Gv20250900.18 |
Low | Yes | 1667 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -28.428 AMFE: -0.650 GC content %: 43.731 | |
| Atauschii_AET2Gv20250900.20 AET2Gv20250900.20 |
Low | No | 948 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -30.063 AMFE: -0.612 GC content %: 49.156 | |
| Atauschii_AET2Gv20250900.21 AET2Gv20250900.21 |
Low | Yes | 2038 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -29.024 AMFE: -0.687 GC content %: 42.247 | |
| Atauschii_AET2Gv20250900.22 AET2Gv20250900.22 |
Low | No | 1135 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -29.251 AMFE: -0.617 GC content %: 47.401 | |
| Atauschii_AET2Gv20250900.24 AET2Gv20250900.24 |
Low | Yes | 1198 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.972 AMFE: -0.687 GC content %: 40.735 | |
| Atauschii_AET2Gv20250900.25 AET2Gv20250900.25 |
Low | No | 833 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -26.915 AMFE: -0.635 GC content %: 42.377 | |
| Atauschii_AET2Gv20250900.3 AET2Gv20250900.3 |
Low | Yes | 1798 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.117 Folding energies... MFEI: -30.161 AMFE: -0.667 GC content %: 45.217 | |
| Atauschii_AET2Gv20250900.6 AET2Gv20250900.6 |
Low | Yes | 1828 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.866 Folding energies... MFEI: -29.322 AMFE: -0.651 GC content %: 45.022 | |
| Atauschii_AET2Gv20250900.8 AET2Gv20250900.8 |
Low | Yes | 2387 | OG0000683 | Get ORF Coding potential... Type: noncoding Potential: -0.347 Folding energies... MFEI: -28.299 AMFE: -0.673 GC content %: 42.019 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20250900.24 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET2Gv20250900.25 | SwissProt | 2021-04-01 | Q5R4U2 | 1.17e-4 |
| Atauschii_AET2Gv20250900.8 | Rfam | 14.6 | MIR1122 | 2.3e-7 |
| Atauschii_AET2Gv20250900.18 | SwissProt | 2021-04-01 | A4FVJ7 | 1.52e-8 |
| Atauschii_AET2Gv20250900.18 | Rfam | 14.6 | MIR1122 | 1.6e-7 |
| Atauschii_AET2Gv20250900.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET2Gv20250900.3 | SwissProt | 2021-04-01 | A4FVJ7 | 4.61e-12 |
| Atauschii_AET2Gv20250900.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET2Gv20250900.20 | SwissProt | 2021-04-01 | A4FVJ7 | 2.02e-18 |
| Atauschii_AET2Gv20250900.21 | Rfam | 14.6 | MIR1122 | 2.0e-7 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
