Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20270100 [ AET2Gv20270100] |
2D | 81771611 | 81779123 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20270100.11 AET2Gv20270100.11 |
Low | No | 734 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.359 Folding energies... MFEI: -25.109 AMFE: -0.627 GC content %: 40.054 | |
Atauschii_AET2Gv20270100.3 AET2Gv20270100.3 |
Low | No | 1925 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -29.995 AMFE: -0.634 GC content %: 47.325 | |
Atauschii_AET2Gv20270100.5 AET2Gv20270100.5 |
Low | No | 2914 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -29.753 AMFE: -0.668 GC content %: 44.509 | |
Atauschii_AET2Gv20270100.6 AET2Gv20270100.6 |
Low | No | 2467 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -29.862 AMFE: -0.670 GC content %: 44.589 | |
Atauschii_AET2Gv20270100.7 AET2Gv20270100.7 |
Low | No | 2973 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -29.664 AMFE: -0.660 GC content %: 44.971 | |
Atauschii_AET2Gv20270100.9 AET2Gv20270100.9 |
Low | No | 1380 | OG0000358 | Get ORF Coding potential... Type: noncoding Potential: -0.576 Folding energies... MFEI: -29.246 AMFE: -0.635 GC content %: 46.087 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20270100.7 | SwissProt | 2021-04-01 | Q9LUI2 | 4.95e-5 |
Atauschii_AET2Gv20270100.9 | SwissProt | 2021-04-01 | Q9LUI2 | 1.62e-5 |
Atauschii_AET2Gv20270100.11 | SwissProt | 2021-04-01 | Q9LUI2 | 7.92e-6 |
Atauschii_AET2Gv20270100.3 | SwissProt | 2021-04-01 | Q9M2T1 | 4.15e-4 |
Atauschii_AET2Gv20270100.5 | SwissProt | 2021-04-01 | Q9LUI2 | 4.83e-5 |
Atauschii_AET2Gv20270100.6 | SwissProt | 2021-04-01 | Q9LUI2 | 3.9e-5 |