Atauschii AET2Gv20272500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20272500 [ AET2Gv20272500] |
2D | 82387618 | 82391819 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20272500.1 AET2Gv20272500.1 |
Low | No | 2277 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -33.917 AMFE: -0.697 GC content %: 48.661 | |
| Atauschii_AET2Gv20272500.10 AET2Gv20272500.10 |
Low | No | 3150 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -29.641 AMFE: -0.689 GC content %: 43.016 | |
| Atauschii_AET2Gv20272500.13 AET2Gv20272500.13 |
Low | No | 2227 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -29.762 AMFE: -0.673 GC content %: 44.230 | |
| Atauschii_AET2Gv20272500.14 AET2Gv20272500.14 |
Low | No | 2192 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.600 Folding energies... MFEI: -30.196 AMFE: -0.676 GC content %: 44.662 | |
| Atauschii_AET2Gv20272500.17 AET2Gv20272500.17 |
Low | No | 1847 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.585 Folding energies... MFEI: -31.072 AMFE: -0.672 GC content %: 46.237 | |
| Atauschii_AET2Gv20272500.18 AET2Gv20272500.18 |
Low | No | 2087 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -30.115 AMFE: -0.674 GC content %: 44.705 | |
| Atauschii_AET2Gv20272500.19 AET2Gv20272500.19 |
Low | No | 2044 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.594 Folding energies... MFEI: -30.440 AMFE: -0.671 GC content %: 45.352 | |
| Atauschii_AET2Gv20272500.2 AET2Gv20272500.2 |
Low | No | 2116 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -34.934 AMFE: -0.703 GC content %: 49.669 | |
| Atauschii_AET2Gv20272500.20 AET2Gv20272500.20 |
Low | No | 1806 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -31.478 AMFE: -0.675 GC content %: 46.622 | |
| Atauschii_AET2Gv20272500.21 AET2Gv20272500.21 |
Low | No | 1870 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -31.016 AMFE: -0.672 GC content %: 46.150 | |
| Atauschii_AET2Gv20272500.22 AET2Gv20272500.22 |
Low | No | 2130 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -29.887 AMFE: -0.665 GC content %: 44.930 | |
| Atauschii_AET2Gv20272500.23 AET2Gv20272500.23 |
Low | No | 2305 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.006 Folding energies... MFEI: -29.570 AMFE: -0.678 GC content %: 43.644 | |
| Atauschii_AET2Gv20272500.26 AET2Gv20272500.26 |
Low | No | 1566 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.568 Folding energies... MFEI: -29.298 AMFE: -0.662 GC content %: 44.253 | |
| Atauschii_AET2Gv20272500.28 AET2Gv20272500.28 |
Low | No | 1811 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -29.128 AMFE: -0.669 GC content %: 43.567 | |
| Atauschii_AET2Gv20272500.29 AET2Gv20272500.29 |
Low | No | 1382 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -30.347 AMFE: -0.664 GC content %: 45.731 | |
| Atauschii_AET2Gv20272500.3 AET2Gv20272500.3 |
Low | No | 2608 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -32.561 AMFE: -0.697 GC content %: 46.741 | |
| Atauschii_AET2Gv20272500.30 AET2Gv20272500.30 |
Low | No | 1608 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -29.179 AMFE: -0.664 GC content %: 43.968 | |
| Atauschii_AET2Gv20272500.31 AET2Gv20272500.31 |
High | No | 644 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -31.118 AMFE: -0.632 GC content %: 49.224 | |
| Atauschii_AET2Gv20272500.36 AET2Gv20272500.36 |
Low | No | 683 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -32.387 AMFE: -0.653 GC content %: 49.634 | |
| Atauschii_AET2Gv20272500.38 AET2Gv20272500.38 |
Low | No | 1055 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -26.730 AMFE: -0.639 GC content %: 41.801 | |
| Atauschii_AET2Gv20272500.39 AET2Gv20272500.39 |
Low | No | 2248 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -26.971 AMFE: -0.682 GC content %: 39.546 | |
| Atauschii_AET2Gv20272500.4 AET2Gv20272500.4 |
Low | No | 2104 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -34.900 AMFE: -0.701 GC content %: 49.810 | |
| Atauschii_AET2Gv20272500.41 AET2Gv20272500.41 |
High | No | 797 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -25.583 AMFE: -0.637 GC content %: 40.151 | |
| Atauschii_AET2Gv20272500.42 AET2Gv20272500.42 |
High | No | 882 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -24.524 AMFE: -0.627 GC content %: 39.116 | |
| Atauschii_AET2Gv20272500.43 AET2Gv20272500.43 |
Low | No | 838 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.039 Folding energies... MFEI: -27.232 AMFE: -0.656 GC content %: 41.527 | |
| Atauschii_AET2Gv20272500.44 AET2Gv20272500.44 |
Low | No | 1701 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.304 Folding energies... MFEI: -26.825 AMFE: -0.675 GC content %: 39.741 | |
| Atauschii_AET2Gv20272500.45 AET2Gv20272500.45 |
Low | No | 594 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -28.199 AMFE: -0.675 GC content %: 41.751 | |
| Atauschii_AET2Gv20272500.46 AET2Gv20272500.46 |
Low | No | 925 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.077 Folding energies... MFEI: -25.114 AMFE: -0.647 GC content %: 38.811 | |
| Atauschii_AET2Gv20272500.47 AET2Gv20272500.47 |
High | No | 888 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -23.806 AMFE: -0.637 GC content %: 37.387 | |
| Atauschii_AET2Gv20272500.48 AET2Gv20272500.48 |
Low | No | 781 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -24.545 AMFE: -0.629 GC content %: 39.052 | |
| Atauschii_AET2Gv20272500.49 AET2Gv20272500.49 |
Low | No | 1041 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -25.917 AMFE: -0.688 GC content %: 37.656 | |
| Atauschii_AET2Gv20272500.5 AET2Gv20272500.5 |
Low | No | 2288 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -34.003 AMFE: -0.700 GC content %: 48.558 | |
| Atauschii_AET2Gv20272500.50 AET2Gv20272500.50 |
Low | No | 1477 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -25.877 AMFE: -0.678 GC content %: 38.186 | |
| Atauschii_AET2Gv20272500.6 AET2Gv20272500.6 |
Low | No | 2267 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.603 Folding energies... MFEI: -32.064 AMFE: -0.699 GC content %: 45.876 | |
| Atauschii_AET2Gv20272500.7 AET2Gv20272500.7 |
Low | No | 2114 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -33.169 AMFE: -0.689 GC content %: 48.108 | |
| Atauschii_AET2Gv20272500.8 AET2Gv20272500.8 |
Low | No | 3535 | OG0000114 | Get ORF Coding potential... Type: noncoding Potential: -0.055 Folding energies... MFEI: -28.744 AMFE: -0.683 GC content %: 42.065 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20272500.2 | SwissProt | 2021-04-01 | Q9LSG3 | 2.63e-7 |
| Atauschii_AET2Gv20272500.45 | SwissProt | 2021-04-01 | Q9LSG3 | 7.0e-16 |
| Atauschii_AET2Gv20272500.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET2Gv20272500.13 | SwissProt | 2021-04-01 | B6SFA4 | 9.42e-6 |
| Atauschii_AET2Gv20272500.38 | SwissProt | 2021-04-01 | B6SFA4 | 1.12e-7 |
| Atauschii_AET2Gv20272500.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET2Gv20272500.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger | |
| Atauschii_AET2Gv20272500.28 | SwissProt | 2021-04-01 | Q9LSG3 | 2.13e-8 |
| Atauschii_AET2Gv20272500.6 | SwissProt | 2021-04-01 | B6SFA4 | 6.31e-7 |
| Atauschii_AET2Gv20272500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/PIF-Harbinger |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
