Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20280700 [ AET2Gv20280700] |
2D | 85500230 | 85514095 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20280700.12 AET2Gv20280700.12 |
High | No | 1366 | OG0024593 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -27.782 AMFE: -0.645 GC content %: 43.045 | |
Atauschii_AET2Gv20280700.20 AET2Gv20280700.20 |
Low | Yes | 1628 | OG0015978 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -28.200 AMFE: -0.682 GC content %: 41.339 | |
Atauschii_AET2Gv20280700.26 AET2Gv20280700.26 |
High | No | 700 | OG0070019 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -24.971 AMFE: -0.633 GC content %: 39.429 | |
Atauschii_AET2Gv20280700.5 AET2Gv20280700.5 |
High | No | 1251 | OG0024593 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -30.496 AMFE: -0.663 GC content %: 45.963 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20280700.20 | Rfam | 14.6 | MIR1122 | 2.0e-11 |
Atauschii_AET2Gv20280700.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/TcMar-Stowaway; LINE/RTE-BovB |