Atauschii AET2Gv20285600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20285600 [ AET2Gv20285600] |
2D | 87976597 | 87983192 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20285600.10 AET2Gv20285600.10 |
Low | No | 1893 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -28.658 AMFE: -0.658 GC content %: 43.582 | |
| Atauschii_AET2Gv20285600.11 AET2Gv20285600.11 |
High | No | 1956 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -27.132 AMFE: -0.673 GC content %: 40.337 | |
| Atauschii_AET2Gv20285600.12 AET2Gv20285600.12 |
Low | No | 2184 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -28.013 AMFE: -0.662 GC content %: 42.308 | |
| Atauschii_AET2Gv20285600.13 AET2Gv20285600.13 |
Low | No | 1903 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -28.965 AMFE: -0.671 GC content %: 43.142 | |
| Atauschii_AET2Gv20285600.14 AET2Gv20285600.14 |
Low | No | 3261 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -26.529 AMFE: -0.683 GC content %: 38.853 | |
| Atauschii_AET2Gv20285600.15 AET2Gv20285600.15 |
Low | No | 3198 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -26.457 AMFE: -0.680 GC content %: 38.931 | |
| Atauschii_AET2Gv20285600.16 AET2Gv20285600.16 |
High | No | 656 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -32.271 AMFE: -0.634 GC content %: 50.915 | |
| Atauschii_AET2Gv20285600.17 AET2Gv20285600.17 |
Low | No | 2155 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -27.972 AMFE: -0.656 GC content %: 42.645 | |
| Atauschii_AET2Gv20285600.19 AET2Gv20285600.19 |
High | No | 457 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -29.168 AMFE: -0.606 GC content %: 48.140 | |
| Atauschii_AET2Gv20285600.2 AET2Gv20285600.2 |
Low | No | 2118 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -27.545 AMFE: -0.656 GC content %: 42.021 | |
| Atauschii_AET2Gv20285600.21 AET2Gv20285600.21 |
High | No | 400 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -30.550 AMFE: -0.614 GC content %: 49.750 | |
| Atauschii_AET2Gv20285600.22 AET2Gv20285600.22 |
Low | No | 2957 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -25.506 AMFE: -0.676 GC content %: 37.741 | |
| Atauschii_AET2Gv20285600.23 AET2Gv20285600.23 |
Low | No | 2636 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -25.095 AMFE: -0.663 GC content %: 37.822 | |
| Atauschii_AET2Gv20285600.24 AET2Gv20285600.24 |
High | No | 865 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -27.237 AMFE: -0.644 GC content %: 42.312 | |
| Atauschii_AET2Gv20285600.25 AET2Gv20285600.25 |
Low | No | 1777 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -25.599 AMFE: -0.647 GC content %: 39.561 | |
| Atauschii_AET2Gv20285600.26 AET2Gv20285600.26 |
Low | No | 1689 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -25.802 AMFE: -0.639 GC content %: 40.379 | |
| Atauschii_AET2Gv20285600.27 AET2Gv20285600.27 |
Low | No | 1585 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -25.962 AMFE: -0.642 GC content %: 40.442 | |
| Atauschii_AET2Gv20285600.29 AET2Gv20285600.29 |
Low | No | 3288 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -25.146 AMFE: -0.685 GC content %: 36.709 | |
| Atauschii_AET2Gv20285600.30 AET2Gv20285600.30 |
Low | No | 2175 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -24.497 AMFE: -0.653 GC content %: 37.517 | |
| Atauschii_AET2Gv20285600.31 AET2Gv20285600.31 |
Low | No | 1493 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.432 AMFE: -0.650 GC content %: 39.116 | |
| Atauschii_AET2Gv20285600.32 AET2Gv20285600.32 |
Low | No | 2109 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -24.708 AMFE: -0.672 GC content %: 36.747 | |
| Atauschii_AET2Gv20285600.33 AET2Gv20285600.33 |
Low | No | 1999 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -23.937 AMFE: -0.659 GC content %: 36.318 | |
| Atauschii_AET2Gv20285600.6 AET2Gv20285600.6 |
Low | No | 2191 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -27.887 AMFE: -0.665 GC content %: 41.944 | |
| Atauschii_AET2Gv20285600.7 AET2Gv20285600.7 |
Low | No | 2448 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -27.557 AMFE: -0.679 GC content %: 40.605 | |
| Atauschii_AET2Gv20285600.8 AET2Gv20285600.8 |
Low | No | 2064 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -28.609 AMFE: -0.668 GC content %: 42.829 | |
| Atauschii_AET2Gv20285600.9 AET2Gv20285600.9 |
Low | No | 1969 | OG0000269 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -28.527 AMFE: -0.662 GC content %: 43.068 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20285600.25 | SwissProt | 2021-04-01 | A5CCZ4 | 1.87e-9 |
| Atauschii_AET2Gv20285600.15 | SwissProt | 2021-04-01 | A5CCZ4 | 3.55e-9 |
| Atauschii_AET2Gv20285600.9 | SwissProt | 2021-04-01 | A5CCZ4 | 2.1e-9 |
| Atauschii_AET2Gv20285600.32 | SwissProt | 2021-04-01 | A5CCZ4 | 2.27e-9 |
| Atauschii_AET2Gv20285600.26 | SwissProt | 2021-04-01 | A5CCZ4 | 1.77e-9 |
| Atauschii_AET2Gv20285600.17 | SwissProt | 2021-04-01 | A5CCZ4 | 2.32e-9 |
| Atauschii_AET2Gv20285600.10 | SwissProt | 2021-04-01 | A5CCZ4 | 2.01e-9 |
| Atauschii_AET2Gv20285600.33 | SwissProt | 2021-04-01 | A5CCZ4 | 1.64e-9 |
| Atauschii_AET2Gv20285600.27 | SwissProt | 2021-04-01 | A5CCZ4 | 1.64e-9 |
| Atauschii_AET2Gv20285600.2 | SwissProt | 2021-04-01 | A5CCZ4 | 2.27e-9 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
