Atauschii AET2Gv20290400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20290400 [ AET2Gv20290400] |
2D | 89968432 | 89971018 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20290400.1 AET2Gv20290400.1 |
Low | No | 819 | OG0002862 | Get ORF Coding potential... Type: noncoding Potential: -0.510 Folding energies... MFEI: -31.404 AMFE: -0.601 GC content %: 52.259 | |
| Atauschii_AET2Gv20290400.2 AET2Gv20290400.2 |
Low | No | 960 | OG0002862 | Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -31.771 AMFE: -0.571 GC content %: 55.625 | |
| Atauschii_AET2Gv20290400.3 AET2Gv20290400.3 |
High | No | 604 | OG0002862 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -34.652 AMFE: -0.621 GC content %: 55.795 | |
| Atauschii_AET2Gv20290400.4 AET2Gv20290400.4 |
Low | No | 1585 | OG0002862 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -28.814 AMFE: -0.592 GC content %: 48.707 | |
| Atauschii_AET2Gv20290400.5 AET2Gv20290400.5 |
Low | No | 359 | OG0070033 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -25.682 AMFE: -0.587 GC content %: 43.733 | |
| Atauschii_AET2Gv20290400.6 AET2Gv20290400.6 |
Low | No | 295 | OG0001539 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -23.322 AMFE: -0.569 GC content %: 41.017 | |
| Atauschii_AET2Gv20290400.7 AET2Gv20290400.7 |
Low | No | 259 | OG0070034 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -19.923 AMFE: -0.501 GC content %: 39.768 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20290400.4 | SwissProt | 2021-04-01 | P49633 | 9.36e-6 |
| Atauschii_AET2Gv20290400.5 | SwissProt | 2021-04-01 | P49633 | 4.16e-7 |
| Atauschii_AET2Gv20290400.6 | SwissProt | 2021-04-01 | Q15370 | 2.94e-5 |
| Atauschii_AET2Gv20290400.7 | SwissProt | 2021-04-01 | Q15370 | 4.09e-5 |
| Atauschii_AET2Gv20290400.1 | SwissProt | 2021-04-01 | P62870 | 1.08e-7 |
| Atauschii_AET2Gv20290400.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/P | |
| Atauschii_AET2Gv20290400.2 | SwissProt | 2021-04-01 | Q15370 | 1.78e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
