Atauschii AET2Gv20300500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20300500 [ AET2Gv20300500] |
2D | 95413316 | 95416458 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20300500.1 AET2Gv20300500.1 |
High | No | 1669 | OG0070055 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -29.413 AMFE: -0.625 GC content %: 47.094 | |
| Atauschii_AET2Gv20300500.10 AET2Gv20300500.10 |
High | No | 1852 | OG0024597 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -30.616 AMFE: -0.648 GC content %: 47.246 | |
| Atauschii_AET2Gv20300500.11 AET2Gv20300500.11 |
High | No | 1695 | OG0006823 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -31.027 AMFE: -0.647 GC content %: 47.965 | |
| Atauschii_AET2Gv20300500.12 AET2Gv20300500.12 |
High | No | 2004 | OG0070056 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.854 AMFE: -0.623 GC content %: 44.711 | |
| Atauschii_AET2Gv20300500.13 AET2Gv20300500.13 |
High | No | 1126 | OG0024598 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -31.448 AMFE: -0.614 GC content %: 51.243 | |
| Atauschii_AET2Gv20300500.14 AET2Gv20300500.14 |
High | No | 1416 | OG0070057 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -30.424 AMFE: -0.621 GC content %: 49.011 | |
| Atauschii_AET2Gv20300500.15 AET2Gv20300500.15 |
High | No | 1922 | OG0006823 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -30.520 AMFE: -0.653 GC content %: 46.722 | |
| Atauschii_AET2Gv20300500.17 AET2Gv20300500.17 |
High | No | 1360 | OG0070058 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -31.221 AMFE: -0.623 GC content %: 50.074 | |
| Atauschii_AET2Gv20300500.18 AET2Gv20300500.18 |
High | No | 1482 | OG0070059 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -30.850 AMFE: -0.638 GC content %: 48.381 | |
| Atauschii_AET2Gv20300500.2 AET2Gv20300500.2 |
High | No | 2075 | OG0070060 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -28.106 AMFE: -0.623 GC content %: 45.108 | |
| Atauschii_AET2Gv20300500.20 AET2Gv20300500.20 |
High | No | 2397 | OG0024599 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -28.477 AMFE: -0.640 GC content %: 44.472 | |
| Atauschii_AET2Gv20300500.21 AET2Gv20300500.21 |
High | No | 1496 | OG0070061 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -30.668 AMFE: -0.638 GC content %: 48.061 | |
| Atauschii_AET2Gv20300500.22 AET2Gv20300500.22 |
High | No | 1935 | OG0006823 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -30.320 AMFE: -0.656 GC content %: 46.253 | |
| Atauschii_AET2Gv20300500.23 AET2Gv20300500.23 |
High | No | 1701 | OG0006823 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -30.459 AMFE: -0.637 GC content %: 47.795 | |
| Atauschii_AET2Gv20300500.24 AET2Gv20300500.24 |
High | No | 2735 | OG0070062 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -28.380 AMFE: -0.653 GC content %: 43.437 | |
| Atauschii_AET2Gv20300500.25 AET2Gv20300500.25 |
High | No | 2472 | OG0070063 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -28.115 AMFE: -0.638 GC content %: 44.053 | |
| Atauschii_AET2Gv20300500.26 AET2Gv20300500.26 |
High | No | 1407 | OG0015979 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -32.004 AMFE: -0.632 GC content %: 50.604 | |
| Atauschii_AET2Gv20300500.27 AET2Gv20300500.27 |
High | No | 2248 | OG0070064 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -27.789 AMFE: -0.630 GC content %: 44.084 | |
| Atauschii_AET2Gv20300500.28 AET2Gv20300500.28 |
High | No | 1932 | OG0070065 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.251 AMFE: -0.630 GC content %: 44.876 | |
| Atauschii_AET2Gv20300500.29 AET2Gv20300500.29 |
High | No | 1369 | OG0006823 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -26.786 AMFE: -0.649 GC content %: 41.271 | |
| Atauschii_AET2Gv20300500.4 AET2Gv20300500.4 |
High | No | 2218 | OG0024597 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -30.261 AMFE: -0.667 GC content %: 45.356 | |
| Atauschii_AET2Gv20300500.5 AET2Gv20300500.5 |
High | No | 2594 | OG0070066 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -28.423 AMFE: -0.648 GC content %: 43.832 | |
| Atauschii_AET2Gv20300500.6 AET2Gv20300500.6 |
High | No | 2301 | OG0024599 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -28.827 AMFE: -0.631 GC content %: 45.676 | |
| Atauschii_AET2Gv20300500.7 AET2Gv20300500.7 |
High | No | 2175 | OG0070067 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -29.094 AMFE: -0.633 GC content %: 45.977 | |
| Atauschii_AET2Gv20300500.8 AET2Gv20300500.8 |
High | No | 1477 | OG0070068 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -30.887 AMFE: -0.634 GC content %: 48.680 | |
| Atauschii_AET2Gv20300500.9 AET2Gv20300500.9 |
High | No | 2074 | OG0070069 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -28.520 AMFE: -0.627 GC content %: 45.516 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
