Atauschii AET2Gv20308600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20308600 [ AET2Gv20308600] |
2D | 100704237 | 100847419 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20308600.12 AET2Gv20308600.12 |
Low | Yes | 1763 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -31.503 AMFE: -0.781 GC content %: 40.329 | |
| Atauschii_AET2Gv20308600.13 AET2Gv20308600.13 |
Low | Yes | 1477 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -31.882 AMFE: -0.793 GC content %: 40.217 | |
| Atauschii_AET2Gv20308600.14 AET2Gv20308600.14 |
Low | Yes | 1706 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -31.835 AMFE: -0.789 GC content %: 40.328 | |
| Atauschii_AET2Gv20308600.15 AET2Gv20308600.15 |
Low | Yes | 1540 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -31.545 AMFE: -0.786 GC content %: 40.130 | |
| Atauschii_AET2Gv20308600.16 AET2Gv20308600.16 |
Low | Yes | 1382 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -32.460 AMFE: -0.793 GC content %: 40.955 | |
| Atauschii_AET2Gv20308600.17 AET2Gv20308600.17 |
Low | Yes | 847 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.462 Folding energies... MFEI: -36.340 AMFE: -0.836 GC content %: 43.447 | |
| Atauschii_AET2Gv20308600.8 AET2Gv20308600.8 |
High | No | 358 | OG0070084 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -36.369 AMFE: -0.556 GC content %: 65.363 | |
| Atauschii_AET2Gv20308600.9 AET2Gv20308600.9 |
High | No | 628 | OG0003673 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -34.283 AMFE: -0.613 GC content %: 55.892 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20308600.12 | Rfam | 14.6 | MIR1122 | 2.1e-20 |
| Atauschii_AET2Gv20308600.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20308600.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Atauschii_AET2Gv20308600.13 | Rfam | 14.6 | MIR1122 | 1.8e-20 |
| Atauschii_AET2Gv20308600.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Atauschii_AET2Gv20308600.14 | Rfam | 14.6 | MIR1122 | 2.1e-20 |
| Atauschii_AET2Gv20308600.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Atauschii_AET2Gv20308600.15 | Rfam | 14.6 | MIR1122 | 1.9e-20 |
| Atauschii_AET2Gv20308600.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Atauschii_AET2Gv20308600.16 | Rfam | 14.6 | MIR1122 | 1.7e-20 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
