Atauschii AET2Gv20308900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20308900 [ AET2Gv20308900] |
2D | 100847907 | 100849559 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20308900.1 AET2Gv20308900.1 |
Low | No | 747 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -26.586 AMFE: -0.641 GC content %: 41.499 | |
| Atauschii_AET2Gv20308900.2 AET2Gv20308900.2 |
Low | No | 820 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -26.122 AMFE: -0.651 GC content %: 40.122 | |
| Atauschii_AET2Gv20308900.3 AET2Gv20308900.3 |
High | No | 825 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -26.255 AMFE: -0.652 GC content %: 40.242 | |
| Atauschii_AET2Gv20308900.4 AET2Gv20308900.4 |
Low | No | 634 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -25.852 AMFE: -0.614 GC content %: 42.114 | |
| Atauschii_AET2Gv20308900.5 AET2Gv20308900.5 |
High | No | 631 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.381 Folding energies... MFEI: -26.387 AMFE: -0.617 GC content %: 42.789 | |
| Atauschii_AET2Gv20308900.6 AET2Gv20308900.6 |
High | No | 504 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -25.893 AMFE: -0.590 GC content %: 43.849 | |
| Atauschii_AET2Gv20308900.7 AET2Gv20308900.7 |
Low | No | 542 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -25.701 AMFE: -0.595 GC content %: 43.173 | |
| Atauschii_AET2Gv20308900.8 AET2Gv20308900.8 |
Low | No | 399 | OG0002864 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -26.015 AMFE: -0.583 GC content %: 44.612 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20308900.1 | SwissProt | 2021-04-01 | A6WX07 | 4.73e-6 |
| Atauschii_AET2Gv20308900.2 | SwissProt | 2021-04-01 | A6WX07 | 6.18e-6 |
| Atauschii_AET2Gv20308900.4 | SwissProt | 2021-04-01 | B2S9C2 | 3.25e-6 |
| Atauschii_AET2Gv20308900.7 | SwissProt | 2021-04-01 | A6WX07 | 2.34e-5 |
| Atauschii_AET2Gv20308900.8 | SwissProt | 2021-04-01 | A6WX07 | 1.66e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
