Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20317800 [ AET2Gv20317800] |
2D | 104955699 | 104959455 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20317800.1 AET2Gv20317800.1 |
Low | No | 1278 | OG0009791 | Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -31.518 AMFE: -0.627 GC content %: 50.235 | |
Atauschii_AET2Gv20317800.10 AET2Gv20317800.10 |
Low | No | 1084 | OG0001880 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -28.939 AMFE: -0.618 GC content %: 46.863 | |
Atauschii_AET2Gv20317800.11 AET2Gv20317800.11 |
Low | No | 1086 | OG0001880 | Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -29.180 AMFE: -0.602 GC content %: 48.435 | |
Atauschii_AET2Gv20317800.4 AET2Gv20317800.4 |
Low | No | 1271 | OG0009791 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -31.149 AMFE: -0.625 GC content %: 49.803 | |
Atauschii_AET2Gv20317800.7 AET2Gv20317800.7 |
Low | No | 1453 | OG0009791 | Get ORF Coding potential... Type: noncoding Potential: -0.150 Folding energies... MFEI: -30.578 AMFE: -0.639 GC content %: 47.832 | |
Atauschii_AET2Gv20317800.8 AET2Gv20317800.8 |
Low | No | 1009 | OG0009791 | Get ORF Coding potential... Type: noncoding Potential: -0.038 Folding energies... MFEI: -29.058 AMFE: -0.652 GC content %: 44.599 | |
Atauschii_AET2Gv20317800.9 AET2Gv20317800.9 |
Low | No | 1370 | OG0001880 | Get ORF Coding potential... Type: noncoding Potential: -0.012 Folding energies... MFEI: -28.044 AMFE: -0.616 GC content %: 45.547 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20317800.9 | SwissProt | 2021-04-01 | Q9LHP2 | 1.34e-17 |
Atauschii_AET2Gv20317800.10 | SwissProt | 2021-04-01 | Q9LHP2 | 1.92e-4 |
Atauschii_AET2Gv20317800.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20317800.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20317800.11 | SwissProt | 2021-04-01 | Q9LHP2 | 2.12e-4 |
Atauschii_AET2Gv20317800.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20317800.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20317800.4 | SwissProt | 2021-04-01 | Q9LHP2 | 3.65e-4 |
Atauschii_AET2Gv20317800.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET2Gv20317800.7 | SwissProt | 2021-04-01 | Q9LHP2 | 5.34e-4 |
... further results