Atauschii AET2Gv20319300

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Atauschii_AET2Gv20319300
[ AET2Gv20319300]
2D 106058451 106059828 v4 Aegilops tauschii (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Atauschii_AET2Gv20319300.1
AET2Gv20319300.1
High No 531 OG0009792
Coding potential...
Type: noncoding Potential: -0.363
Folding energies...
MFEI: -31.620 AMFE: -0.634
GC content
%: 49.906
Atauschii_AET2Gv20319300.2
AET2Gv20319300.2
High No 1371 OG0009792
Coding potential...
Type: noncoding Potential: -0.589
Folding energies...
MFEI: -29.949 AMFE: -0.649
GC content
%: 46.171
Atauschii_AET2Gv20319300.3
AET2Gv20319300.3
High No 613 OG0009792
Coding potential...
Type: noncoding Potential: -0.404
Folding energies...
MFEI: -32.104 AMFE: -0.637
GC content
%: 50.408
Atauschii_AET2Gv20319300.4
AET2Gv20319300.4
High No 547 OG0009792
Coding potential...
Type: noncoding Potential: -0.371
Folding energies...
MFEI: -32.888 AMFE: -0.636
GC content
%: 51.737


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Atauschii_AET2Gv20319300.png