Atauschii AET2Gv20337000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20337000 [ AET2Gv20337000] |
2D | 114636597 | 114643308 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20337000.12 AET2Gv20337000.12 |
Low | No | 3366 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -29.441 AMFE: -0.672 GC content %: 43.821 | |
| Atauschii_AET2Gv20337000.13 AET2Gv20337000.13 |
Low | No | 3778 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -31.247 AMFE: -0.683 GC content %: 45.765 | |
| Atauschii_AET2Gv20337000.2 AET2Gv20337000.2 |
Low | No | 2462 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -35.024 AMFE: -0.688 GC content %: 50.934 | |
| Atauschii_AET2Gv20337000.20 AET2Gv20337000.20 |
Low | No | 1980 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.152 Folding energies... MFEI: -34.874 AMFE: -0.673 GC content %: 51.818 | |
| Atauschii_AET2Gv20337000.3 AET2Gv20337000.3 |
Low | No | 3318 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -27.529 AMFE: -0.675 GC content %: 40.808 | |
| Atauschii_AET2Gv20337000.34 AET2Gv20337000.34 |
Low | No | 2864 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -28.286 AMFE: -0.669 GC content %: 42.284 | |
| Atauschii_AET2Gv20337000.36 AET2Gv20337000.36 |
Low | No | 3221 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -30.062 AMFE: -0.680 GC content %: 44.241 | |
| Atauschii_AET2Gv20337000.4 AET2Gv20337000.4 |
Low | No | 3406 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -27.616 AMFE: -0.679 GC content %: 40.664 | |
| Atauschii_AET2Gv20337000.41 AET2Gv20337000.41 |
Low | No | 3091 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -29.586 AMFE: -0.669 GC content %: 44.193 | |
| Atauschii_AET2Gv20337000.45 AET2Gv20337000.45 |
Low | No | 3170 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -29.631 AMFE: -0.675 GC content %: 43.880 | |
| Atauschii_AET2Gv20337000.46 AET2Gv20337000.46 |
Low | No | 3148 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -29.784 AMFE: -0.677 GC content %: 43.964 | |
| Atauschii_AET2Gv20337000.48 AET2Gv20337000.48 |
Low | No | 3067 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -29.755 AMFE: -0.675 GC content %: 44.115 | |
| Atauschii_AET2Gv20337000.50 AET2Gv20337000.50 |
Low | No | 2477 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -25.083 AMFE: -0.666 GC content %: 37.667 | |
| Atauschii_AET2Gv20337000.53 AET2Gv20337000.53 |
Low | No | 3011 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -29.794 AMFE: -0.671 GC content %: 44.371 | |
| Atauschii_AET2Gv20337000.54 AET2Gv20337000.54 |
Low | No | 1311 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -30.625 AMFE: -0.664 GC content %: 46.148 | |
| Atauschii_AET2Gv20337000.57 AET2Gv20337000.57 |
Low | No | 930 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -24.849 AMFE: -0.628 GC content %: 39.570 | |
| Atauschii_AET2Gv20337000.58 AET2Gv20337000.58 |
Low | No | 1226 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -29.666 AMFE: -0.644 GC content %: 46.085 | |
| Atauschii_AET2Gv20337000.59 AET2Gv20337000.59 |
Low | No | 1032 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -34.845 AMFE: -0.678 GC content %: 51.357 | |
| Atauschii_AET2Gv20337000.9 AET2Gv20337000.9 |
Low | No | 3730 | OG0000555 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -31.056 AMFE: -0.675 GC content %: 45.979 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20337000.54 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20337000.48 | SwissProt | 2021-04-01 | Q940Y1 | 1.49e-5 |
| Atauschii_AET2Gv20337000.36 | SwissProt | 2021-04-01 | Q940Y1 | 1.58e-5 |
| Atauschii_AET2Gv20337000.34 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20337000.13 | SwissProt | 2021-04-01 | Q940Y1 | 1.92e-5 |
| Atauschii_AET2Gv20337000.59 | SwissProt | 2021-04-01 | Q940Y1 | 8.08e-7 |
| Atauschii_AET2Gv20337000.58 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20337000.50 | SwissProt | 2021-04-01 | Q940Y1 | 1.13e-5 |
| Atauschii_AET2Gv20337000.4 | SwissProt | 2021-04-01 | Q940Y1 | 1.7e-5 |
| Atauschii_AET2Gv20337000.36 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
