GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20338700 [ AET2Gv20338700]	2D	115577435	115581662	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20338700.1 AET2Gv20338700.1	High	No	320	OG0070137		Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -24.688 AMFE: -0.454 GC content %: 54.375
Atauschii_AET2Gv20338700.10 AET2Gv20338700.10	High	No	239	OG0070138		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -29.205 AMFE: -0.558 GC content %: 52.301
Atauschii_AET2Gv20338700.9 AET2Gv20338700.9	Low	No	321	OG0070139		Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -28.193 AMFE: -0.545 GC content %: 51.713

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20338700.9	SwissProt	2021-04-01	Q8R2Y0	1.97e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).