Atauschii AET2Gv20345000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20345000 [ AET2Gv20345000] |
2D | 118161018 | 118165638 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20345000.1 AET2Gv20345000.1 |
High | No | 393 | OG0009794 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -42.112 AMFE: -0.634 GC content %: 66.412 | |
| Atauschii_AET2Gv20345000.2 AET2Gv20345000.2 |
High | No | 1928 | OG0009794 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -27.152 AMFE: -0.619 GC content %: 43.880 | |
| Atauschii_AET2Gv20345000.3 AET2Gv20345000.3 |
Low | No | 779 | OG0009794 | Get ORF Coding potential... Type: coding Potential: 0.089 Folding energies... MFEI: -31.938 AMFE: -0.648 GC content %: 49.294 | |
| Atauschii_AET2Gv20345000.4 AET2Gv20345000.4 |
High | No | 282 | OG0009794 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -35.922 AMFE: -0.629 GC content %: 57.092 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
