Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20345300 [ AET2Gv20345300] |
2D | 118226891 | 118237464 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20345300.15 AET2Gv20345300.15 |
Low | No | 3892 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -0.524 Folding energies... MFEI: -25.709 AMFE: -0.643 GC content %: 40.005 | |
Atauschii_AET2Gv20345300.19 AET2Gv20345300.19 |
High | No | 3812 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -24.289 AMFE: -0.621 GC content %: 39.087 | |
Atauschii_AET2Gv20345300.20 AET2Gv20345300.20 |
High | No | 2094 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -23.524 AMFE: -0.620 GC content %: 37.966 | |
Atauschii_AET2Gv20345300.21 AET2Gv20345300.21 |
High | No | 2082 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -23.948 AMFE: -0.625 GC content %: 38.329 | |
Atauschii_AET2Gv20345300.22 AET2Gv20345300.22 |
High | No | 654 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -27.630 AMFE: -0.600 GC content %: 46.024 | |
Atauschii_AET2Gv20345300.23 AET2Gv20345300.23 |
High | No | 429 | OG0004663 | Get ORF Coding potential... Type: noncoding Potential: -1.318 Folding energies... MFEI: -30.000 AMFE: -0.590 GC content %: 50.816 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20345300.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |