Atauschii AET2Gv20345400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20345400 [ AET2Gv20345400] |
2D | 118229151 | 118237464 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20345400.10 AET2Gv20345400.10 |
Low | No | 3553 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -29.865 AMFE: -0.682 GC content %: 43.822 | |
| Atauschii_AET2Gv20345400.18 AET2Gv20345400.18 |
Low | No | 3267 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -30.318 AMFE: -0.686 GC content %: 44.200 | |
| Atauschii_AET2Gv20345400.23 AET2Gv20345400.23 |
Low | No | 3305 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -0.649 Folding energies... MFEI: -30.502 AMFE: -0.690 GC content %: 44.236 | |
| Atauschii_AET2Gv20345400.3 AET2Gv20345400.3 |
Low | No | 3465 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -30.404 AMFE: -0.683 GC content %: 44.502 | |
| Atauschii_AET2Gv20345400.34 AET2Gv20345400.34 |
Low | No | 825 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -0.387 Folding energies... MFEI: -29.491 AMFE: -0.622 GC content %: 47.394 | |
| Atauschii_AET2Gv20345400.38 AET2Gv20345400.38 |
Low | No | 1543 | OG0070153 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -27.414 AMFE: -0.616 GC content %: 44.524 | |
| Atauschii_AET2Gv20345400.41 AET2Gv20345400.41 |
High | No | 821 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -33.459 AMFE: -0.656 GC content %: 51.035 | |
| Atauschii_AET2Gv20345400.7 AET2Gv20345400.7 |
Low | No | 3446 | OG0003678 | Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -29.875 AMFE: -0.687 GC content %: 43.500 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20345400.18 | SwissProt | 2021-04-01 | Q66GR3 | 3.24e-7 |
| Atauschii_AET2Gv20345400.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET2Gv20345400.23 | SwissProt | 2021-04-01 | Q66GR3 | 5.98e-8 |
| Atauschii_AET2Gv20345400.3 | SwissProt | 2021-04-01 | Q66GR3 | 7.17e-8 |
| Atauschii_AET2Gv20345400.34 | SwissProt | 2021-04-01 | Q66GR3 | 1.19e-8 |
| Atauschii_AET2Gv20345400.38 | SwissProt | 2021-04-01 | Q66GR3 | 1.41e-8 |
| Atauschii_AET2Gv20345400.10 | SwissProt | 2021-04-01 | Q66GR3 | 7.37e-8 |
| Atauschii_AET2Gv20345400.7 | SwissProt | 2021-04-01 | Q66GR3 | 6.26e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
