Atauschii AET2Gv20365000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20365000 [ AET2Gv20365000] |
2D | 128085699 | 128090786 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20365000.10 AET2Gv20365000.10 |
Low | No | 1416 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -25.042 AMFE: -0.527 GC content %: 47.528 | |
| Atauschii_AET2Gv20365000.11 AET2Gv20365000.11 |
Low | No | 1695 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -22.690 AMFE: -0.518 GC content %: 43.835 | |
| Atauschii_AET2Gv20365000.12 AET2Gv20365000.12 |
High | No | 1000 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -21.610 AMFE: -0.441 GC content %: 49.000 | |
| Atauschii_AET2Gv20365000.2 AET2Gv20365000.2 |
Low | No | 2572 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -31.512 AMFE: -0.628 GC content %: 50.156 | |
| Atauschii_AET2Gv20365000.3 AET2Gv20365000.3 |
Low | No | 2393 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -32.269 AMFE: -0.624 GC content %: 51.692 | |
| Atauschii_AET2Gv20365000.4 AET2Gv20365000.4 |
Low | No | 3650 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -28.389 AMFE: -0.608 GC content %: 46.712 | |
| Atauschii_AET2Gv20365000.5 AET2Gv20365000.5 |
Low | No | 2850 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -30.133 AMFE: -0.601 GC content %: 50.140 | |
| Atauschii_AET2Gv20365000.6 AET2Gv20365000.6 |
Low | No | 2576 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -30.202 AMFE: -0.586 GC content %: 51.553 | |
| Atauschii_AET2Gv20365000.7 AET2Gv20365000.7 |
Low | No | 2411 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -28.723 AMFE: -0.587 GC content %: 48.942 | |
| Atauschii_AET2Gv20365000.8 AET2Gv20365000.8 |
Low | No | 3145 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -26.661 AMFE: -0.592 GC content %: 45.056 | |
| Atauschii_AET2Gv20365000.9 AET2Gv20365000.9 |
Low | No | 1347 | OG0001540 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -25.984 AMFE: -0.533 GC content %: 48.775 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20365000.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20365000.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
