GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20422400 [ AET2Gv20422400]	2D	164525494	164526858	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20422400.1 AET2Gv20422400.1	High	No	1365	OG0006829		Get ORF Coding potential... Type: noncoding Potential: -0.426 Folding energies... MFEI: -37.004 AMFE: -0.672 GC content %: 55.092
Atauschii_AET2Gv20422400.2 AET2Gv20422400.2	High	No	534	OG0006829		Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -35.655 AMFE: -0.624 GC content %: 57.116
Atauschii_AET2Gv20422400.3 AET2Gv20422400.3	High	No	689	OG0006829		Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -40.784 AMFE: -0.674 GC content %: 60.522

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).