GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20424100 [ AET2Gv20424100]	2D	165503263	165503667	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20424100.1 AET2Gv20424100.1	High	No	231	OG0004666		Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -21.688 AMFE: -0.464 GC content %: 46.753
Atauschii_AET2Gv20424100.2 AET2Gv20424100.2	Low	No	303	OG0016002		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -23.927 AMFE: -0.511 GC content %: 46.865

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20424100.2	RepBase (RepeatMasker)	2014-01-31	RC/Helitron

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).