Atauschii AET2Gv20432500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20432500 [ AET2Gv20432500] |
2D | 173691123 | 173699624 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20432500.10 AET2Gv20432500.10 |
Low | No | 3542 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -27.363 AMFE: -0.693 GC content %: 39.497 | |
| Atauschii_AET2Gv20432500.12 AET2Gv20432500.12 |
High | No | 1540 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -27.039 AMFE: -0.727 GC content %: 37.208 | |
| Atauschii_AET2Gv20432500.13 AET2Gv20432500.13 |
High | No | 1451 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -27.140 AMFE: -0.703 GC content %: 38.594 | |
| Atauschii_AET2Gv20432500.15 AET2Gv20432500.15 |
Low | No | 2702 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -27.839 AMFE: -0.687 GC content %: 40.526 | |
| Atauschii_AET2Gv20432500.16 AET2Gv20432500.16 |
Low | No | 3273 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -28.243 AMFE: -0.698 GC content %: 40.483 | |
| Atauschii_AET2Gv20432500.18 AET2Gv20432500.18 |
High | No | 4174 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -25.812 AMFE: -0.697 GC content %: 37.039 | |
| Atauschii_AET2Gv20432500.19 AET2Gv20432500.19 |
High | No | 657 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -26.286 AMFE: -0.685 GC content %: 38.356 | |
| Atauschii_AET2Gv20432500.2 AET2Gv20432500.2 |
Low | No | 1323 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -26.228 AMFE: -0.707 GC content %: 37.113 | |
| Atauschii_AET2Gv20432500.21 AET2Gv20432500.21 |
Low | No | 1137 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -29.991 AMFE: -0.697 GC content %: 43.008 | |
| Atauschii_AET2Gv20432500.22 AET2Gv20432500.22 |
High | No | 2141 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -27.898 AMFE: -0.676 GC content %: 41.242 | |
| Atauschii_AET2Gv20432500.5 AET2Gv20432500.5 |
High | No | 2919 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -26.718 AMFE: -0.698 GC content %: 38.267 | |
| Atauschii_AET2Gv20432500.6 AET2Gv20432500.6 |
High | No | 3532 | OG0000767 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -27.494 AMFE: -0.695 GC content %: 39.553 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20432500.16 | SwissProt | 2021-04-01 | Q941Z0 | 1.61e-4 |
| Atauschii_AET2Gv20432500.2 | SwissProt | 2021-04-01 | Q8L3X9 | 6.6e-4 |
| Atauschii_AET2Gv20432500.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv20432500.10 | SwissProt | 2021-04-01 | Q941Z0 | 7.42e-4 |
| Atauschii_AET2Gv20432500.15 | SwissProt | 2021-04-01 | Q941Z0 | 9.42e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
