Atauschii AET2Gv20438700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20438700 [ AET2Gv20438700] |
2D | 177148274 | 177153792 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20438700.1 AET2Gv20438700.1 |
High | No | 1272 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -28.836 AMFE: -0.520 GC content %: 55.425 | |
| Atauschii_AET2Gv20438700.2 AET2Gv20438700.2 |
High | No | 1562 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -29.142 AMFE: -0.561 GC content %: 51.985 | |
| Atauschii_AET2Gv20438700.3 AET2Gv20438700.3 |
High | No | 2401 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -26.306 AMFE: -0.582 GC content %: 45.190 | |
| Atauschii_AET2Gv20438700.4 AET2Gv20438700.4 |
High | No | 1484 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -28.295 AMFE: -0.538 GC content %: 52.561 | |
| Atauschii_AET2Gv20438700.5 AET2Gv20438700.5 |
High | No | 1324 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -27.598 AMFE: -0.575 GC content %: 48.036 | |
| Atauschii_AET2Gv20438700.6 AET2Gv20438700.6 |
Low | No | 3106 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.618 AMFE: -0.662 GC content %: 40.180 | |
| Atauschii_AET2Gv20438700.7 AET2Gv20438700.7 |
High | No | 1114 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -26.706 AMFE: -0.605 GC content %: 44.165 | |
| Atauschii_AET2Gv20438700.8 AET2Gv20438700.8 |
High | No | 2350 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.743 AMFE: -0.637 GC content %: 40.383 | |
| Atauschii_AET2Gv20438700.9 AET2Gv20438700.9 |
High | No | 1309 | OG0002344 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -26.814 AMFE: -0.632 GC content %: 42.399 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20438700.6 | SwissProt | 2021-04-01 | B8Y6I0 | 7.08e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
