Atauschii AET2Gv20453400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20453400 [ AET2Gv20453400] |
2D | 186858289 | 186871397 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20453400.15 AET2Gv20453400.15 |
High | No | 226 | OG0070316 | Get ORF Coding potential... Type: noncoding Potential: -1.391 Folding energies... MFEI: -26.062 AMFE: -0.503 GC content %: 51.770 | |
| Atauschii_AET2Gv20453400.41 AET2Gv20453400.41 |
High | No | 718 | OG0070317 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -28.217 AMFE: -0.629 GC content %: 44.847 | |
| Atauschii_AET2Gv20453400.43 AET2Gv20453400.43 |
Low | No | 1945 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -33.198 AMFE: -0.689 GC content %: 48.175 | |
| Atauschii_AET2Gv20453400.44 AET2Gv20453400.44 |
Low | No | 2346 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -29.991 AMFE: -0.697 GC content %: 43.009 | |
| Atauschii_AET2Gv20453400.45 AET2Gv20453400.45 |
Low | No | 2849 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -29.968 AMFE: -0.698 GC content %: 42.927 | |
| Atauschii_AET2Gv20453400.46 AET2Gv20453400.46 |
Low | No | 2387 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -30.511 AMFE: -0.692 GC content %: 44.072 | |
| Atauschii_AET2Gv20453400.47 AET2Gv20453400.47 |
Low | No | 2036 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -30.309 AMFE: -0.703 GC content %: 43.124 | |
| Atauschii_AET2Gv20453400.48 AET2Gv20453400.48 |
Low | No | 1822 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -31.416 AMFE: -0.690 GC content %: 45.499 | |
| Atauschii_AET2Gv20453400.49 AET2Gv20453400.49 |
Low | No | 812 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -33.534 AMFE: -0.679 GC content %: 49.384 | |
| Atauschii_AET2Gv20453400.50 AET2Gv20453400.50 |
Low | No | 1307 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -30.888 AMFE: -0.697 GC content %: 44.300 | |
| Atauschii_AET2Gv20453400.51 AET2Gv20453400.51 |
Low | No | 870 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -31.897 AMFE: -0.665 GC content %: 47.931 | |
| Atauschii_AET2Gv20453400.52 AET2Gv20453400.52 |
Low | No | 971 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -32.338 AMFE: -0.678 GC content %: 47.683 | |
| Atauschii_AET2Gv20453400.53 AET2Gv20453400.53 |
Low | No | 814 | OG0001542 | Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -32.076 AMFE: -0.664 GC content %: 48.280 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20453400.45 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/MULE-MuDR | |
| Atauschii_AET2Gv20453400.51 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.46 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/MULE-MuDR | |
| Atauschii_AET2Gv20453400.52 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.47 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/MULE-MuDR | |
| Atauschii_AET2Gv20453400.53 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.48 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.43 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.49 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20453400.44 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/MULE-MuDR |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
