Atauschii AET2Gv20479900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20479900 [ AET2Gv20479900] |
2D | 203703076 | 203706238 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20479900.1 AET2Gv20479900.1 |
High | No | 1403 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -25.331 AMFE: -0.664 GC content %: 38.133 | |
| Atauschii_AET2Gv20479900.10 AET2Gv20479900.10 |
High | No | 2770 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -30.134 AMFE: -0.693 GC content %: 43.466 | |
| Atauschii_AET2Gv20479900.11 AET2Gv20479900.11 |
High | No | 1464 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -32.862 AMFE: -0.670 GC content %: 49.044 | |
| Atauschii_AET2Gv20479900.12 AET2Gv20479900.12 |
High | No | 1529 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -33.133 AMFE: -0.671 GC content %: 49.379 | |
| Atauschii_AET2Gv20479900.13 AET2Gv20479900.13 |
High | No | 2015 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -31.385 AMFE: -0.683 GC content %: 45.955 | |
| Atauschii_AET2Gv20479900.14 AET2Gv20479900.14 |
High | No | 1377 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -33.508 AMFE: -0.675 GC content %: 49.673 | |
| Atauschii_AET2Gv20479900.15 AET2Gv20479900.15 |
High | No | 1987 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -31.475 AMFE: -0.676 GC content %: 46.553 | |
| Atauschii_AET2Gv20479900.16 AET2Gv20479900.16 |
High | No | 1339 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -25.161 AMFE: -0.652 GC content %: 38.611 | |
| Atauschii_AET2Gv20479900.17 AET2Gv20479900.17 |
High | No | 1911 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.952 AMFE: -0.680 GC content %: 46.991 | |
| Atauschii_AET2Gv20479900.18 AET2Gv20479900.18 |
High | No | 1552 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -27.990 AMFE: -0.675 GC content %: 41.495 | |
| Atauschii_AET2Gv20479900.19 AET2Gv20479900.19 |
Low | No | 991 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.327 AMFE: -0.630 GC content %: 41.776 | |
| Atauschii_AET2Gv20479900.2 AET2Gv20479900.2 |
Low | No | 1582 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -32.598 AMFE: -0.671 GC content %: 48.609 | |
| Atauschii_AET2Gv20479900.20 AET2Gv20479900.20 |
High | No | 1333 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -33.826 AMFE: -0.672 GC content %: 50.338 | |
| Atauschii_AET2Gv20479900.21 AET2Gv20479900.21 |
High | No | 2152 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -30.112 AMFE: -0.665 GC content %: 45.260 | |
| Atauschii_AET2Gv20479900.22 AET2Gv20479900.22 |
High | No | 1133 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -25.605 AMFE: -0.642 GC content %: 39.894 | |
| Atauschii_AET2Gv20479900.23 AET2Gv20479900.23 |
High | No | 1640 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -32.902 AMFE: -0.680 GC content %: 48.415 | |
| Atauschii_AET2Gv20479900.3 AET2Gv20479900.3 |
High | No | 2598 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -30.708 AMFE: -0.692 GC content %: 44.380 | |
| Atauschii_AET2Gv20479900.4 AET2Gv20479900.4 |
High | No | 1976 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -31.523 AMFE: -0.679 GC content %: 46.407 | |
| Atauschii_AET2Gv20479900.5 AET2Gv20479900.5 |
High | No | 1541 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -32.609 AMFE: -0.673 GC content %: 48.475 | |
| Atauschii_AET2Gv20479900.6 AET2Gv20479900.6 |
High | No | 2014 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.256 AMFE: -0.680 GC content %: 45.978 | |
| Atauschii_AET2Gv20479900.7 AET2Gv20479900.7 |
High | No | 2527 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -30.665 AMFE: -0.691 GC content %: 44.361 | |
| Atauschii_AET2Gv20479900.8 AET2Gv20479900.8 |
High | No | 2793 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -30.007 AMFE: -0.690 GC content %: 43.466 | |
| Atauschii_AET2Gv20479900.9 AET2Gv20479900.9 |
High | No | 2867 | OG0000359 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -29.620 AMFE: -0.687 GC content %: 43.111 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20479900.19 | SwissProt | 2021-04-01 | F7BJB9 | 1.6e-6 |
| Atauschii_AET2Gv20479900.2 | SwissProt | 2021-04-01 | F7BJB9 | 7.16e-4 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
