Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20480500 [ AET2Gv20480500] |
2D | 203718993 | 203724032 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20480500.2 AET2Gv20480500.2 |
High | No | 543 | OG0024656 | Get ORF Coding potential... Type: noncoding Potential: -0.199 Folding energies... MFEI: -27.587 AMFE: -0.585 GC content %: 47.145 | |
Atauschii_AET2Gv20480500.27 AET2Gv20480500.27 |
Low | Yes | 745 | OG0024657 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -39.893 AMFE: -0.727 GC content %: 54.899 | |
Atauschii_AET2Gv20480500.28 AET2Gv20480500.28 |
Low | Yes | 800 | OG0024657 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -39.075 AMFE: -0.687 GC content %: 56.875 | |
Atauschii_AET2Gv20480500.3 AET2Gv20480500.3 |
High | No | 431 | OG0024656 | Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -24.014 AMFE: -0.510 GC content %: 47.100 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20480500.28 | Rfam | 14.6 | MIR1122 | 3.7e-13 |
Atauschii_AET2Gv20480500.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET2Gv20480500.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET2Gv20480500.27 | Rfam | 14.6 | MIR1122 | 3.4e-13 |