GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20485600 [ AET2Gv20485600]	2D	207522348	207530796	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20485600.10 AET2Gv20485600.10	High	No	738	OG0024659		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -28.550 AMFE: -0.652 GC content %: 43.767
Atauschii_AET2Gv20485600.11 AET2Gv20485600.11	High	No	350	OG0024659		Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -29.429 AMFE: -0.606 GC content %: 48.571
Atauschii_AET2Gv20485600.12 AET2Gv20485600.12	Low	No	331	OG0070382		Get ORF Coding potential... Type: noncoding Potential: -0.237 Folding energies... MFEI: -27.100 AMFE: -0.619 GC content %: 43.807

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20485600.12	SwissProt	2021-04-01	Q58D06	9.67e-12

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).