Atauschii AET2Gv20485900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20485900 [ AET2Gv20485900] |
2D | 207795343 | 207801321 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20485900.1 AET2Gv20485900.1 |
Low | No | 1423 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -27.843 AMFE: -0.584 GC content %: 47.646 | |
| Atauschii_AET2Gv20485900.10 AET2Gv20485900.10 |
Low | No | 1284 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -28.224 AMFE: -0.610 GC content %: 46.262 | |
| Atauschii_AET2Gv20485900.11 AET2Gv20485900.11 |
Low | No | 1343 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.191 AMFE: -0.602 GC content %: 46.835 | |
| Atauschii_AET2Gv20485900.12 AET2Gv20485900.12 |
Low | No | 1682 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -30.143 AMFE: -0.574 GC content %: 52.497 | |
| Atauschii_AET2Gv20485900.13 AET2Gv20485900.13 |
Low | No | 1468 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -30.041 AMFE: -0.588 GC content %: 51.090 | |
| Atauschii_AET2Gv20485900.14 AET2Gv20485900.14 |
Low | No | 1531 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -30.274 AMFE: -0.569 GC content %: 53.168 | |
| Atauschii_AET2Gv20485900.15 AET2Gv20485900.15 |
Low | No | 1672 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -31.166 AMFE: -0.566 GC content %: 55.084 | |
| Atauschii_AET2Gv20485900.16 AET2Gv20485900.16 |
Low | No | 1592 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -31.055 AMFE: -0.563 GC content %: 55.151 | |
| Atauschii_AET2Gv20485900.17 AET2Gv20485900.17 |
Low | No | 2219 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -30.050 AMFE: -0.590 GC content %: 50.924 | |
| Atauschii_AET2Gv20485900.18 AET2Gv20485900.18 |
Low | No | 1642 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -31.309 AMFE: -0.566 GC content %: 55.359 | |
| Atauschii_AET2Gv20485900.19 AET2Gv20485900.19 |
Low | No | 1623 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -31.140 AMFE: -0.560 GC content %: 55.576 | |
| Atauschii_AET2Gv20485900.2 AET2Gv20485900.2 |
Low | No | 2256 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -29.632 AMFE: -0.587 GC content %: 50.488 | |
| Atauschii_AET2Gv20485900.20 AET2Gv20485900.20 |
Low | No | 1602 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -31.592 AMFE: -0.566 GC content %: 55.805 | |
| Atauschii_AET2Gv20485900.21 AET2Gv20485900.21 |
Low | No | 1230 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.463 AMFE: -0.587 GC content %: 48.455 | |
| Atauschii_AET2Gv20485900.22 AET2Gv20485900.22 |
Low | No | 1210 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -28.306 AMFE: -0.588 GC content %: 48.099 | |
| Atauschii_AET2Gv20485900.23 AET2Gv20485900.23 |
Low | No | 1600 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -30.656 AMFE: -0.564 GC content %: 54.375 | |
| Atauschii_AET2Gv20485900.24 AET2Gv20485900.24 |
Low | No | 1943 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -30.051 AMFE: -0.575 GC content %: 52.290 | |
| Atauschii_AET2Gv20485900.25 AET2Gv20485900.25 |
Low | No | 1478 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -31.373 AMFE: -0.558 GC content %: 56.225 | |
| Atauschii_AET2Gv20485900.26 AET2Gv20485900.26 |
Low | No | 2056 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -29.937 AMFE: -0.583 GC content %: 51.362 | |
| Atauschii_AET2Gv20485900.27 AET2Gv20485900.27 |
Low | No | 748 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -17.126 AMFE: -0.527 GC content %: 32.487 | |
| Atauschii_AET2Gv20485900.28 AET2Gv20485900.28 |
Low | No | 1479 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -24.997 AMFE: -0.645 GC content %: 38.742 | |
| Atauschii_AET2Gv20485900.29 AET2Gv20485900.29 |
Low | No | 345 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -25.623 AMFE: -0.670 GC content %: 38.261 | |
| Atauschii_AET2Gv20485900.3 AET2Gv20485900.3 |
Low | No | 2259 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -29.637 AMFE: -0.587 GC content %: 50.509 | |
| Atauschii_AET2Gv20485900.30 AET2Gv20485900.30 |
Low | No | 1248 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -29.046 AMFE: -0.584 GC content %: 49.760 | |
| Atauschii_AET2Gv20485900.31 AET2Gv20485900.31 |
High | No | 673 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -34.502 AMFE: -0.522 GC content %: 66.122 | |
| Atauschii_AET2Gv20485900.4 AET2Gv20485900.4 |
Low | No | 1684 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -30.861 AMFE: -0.571 GC content %: 54.038 | |
| Atauschii_AET2Gv20485900.5 AET2Gv20485900.5 |
Low | No | 2290 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -30.087 AMFE: -0.600 GC content %: 50.131 | |
| Atauschii_AET2Gv20485900.6 AET2Gv20485900.6 |
Low | No | 2310 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -29.810 AMFE: -0.591 GC content %: 50.433 | |
| Atauschii_AET2Gv20485900.7 AET2Gv20485900.7 |
High | No | 666 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -25.045 AMFE: -0.550 GC content %: 45.495 | |
| Atauschii_AET2Gv20485900.8 AET2Gv20485900.8 |
Low | No | 1483 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -29.595 AMFE: -0.577 GC content %: 51.315 | |
| Atauschii_AET2Gv20485900.9 AET2Gv20485900.9 |
Low | No | 1356 | OG0000115 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -29.764 AMFE: -0.588 GC content %: 50.590 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20485900.13 | SwissProt | 2021-04-01 | Q9FPT1 | 5.35e-10 |
| Atauschii_AET2Gv20485900.29 | SwissProt | 2021-04-01 | Q9FPT1 | 1.86e-12 |
| Atauschii_AET2Gv20485900.23 | SwissProt | 2021-04-01 | Q9FPT1 | 3.05e-10 |
| Atauschii_AET2Gv20485900.19 | SwissProt | 2021-04-01 | Q9FPT1 | 6.58e-10 |
| Atauschii_AET2Gv20485900.8 | SwissProt | 2021-04-01 | Q9FPT1 | 2.58e-10 |
| Atauschii_AET2Gv20485900.14 | SwissProt | 2021-04-01 | Q9FPT1 | 5.83e-10 |
| Atauschii_AET2Gv20485900.3 | SwissProt | 2021-04-01 | Q9FPT1 | 1.18e-9 |
| Atauschii_AET2Gv20485900.1 | SwissProt | 2021-04-01 | Q9FPT1 | 2.35e-10 |
| Atauschii_AET2Gv20485900.24 | SwissProt | 2021-04-01 | Q9FPT1 | 4.39e-10 |
| Atauschii_AET2Gv20485900.2 | SwissProt | 2021-04-01 | Q9FPT1 | 5.63e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
