Atauschii AET2Gv20499700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20499700 [ AET2Gv20499700] |
2D | 227531500 | 227536169 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20499700.10 AET2Gv20499700.10 |
High | No | 1637 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -32.358 AMFE: -0.669 GC content %: 48.381 | |
| Atauschii_AET2Gv20499700.11 AET2Gv20499700.11 |
High | No | 1730 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -32.347 AMFE: -0.675 GC content %: 47.919 | |
| Atauschii_AET2Gv20499700.13 AET2Gv20499700.13 |
High | No | 1254 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -34.155 AMFE: -0.665 GC content %: 51.356 | |
| Atauschii_AET2Gv20499700.14 AET2Gv20499700.14 |
High | No | 2184 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -31.246 AMFE: -0.675 GC content %: 46.291 | |
| Atauschii_AET2Gv20499700.15 AET2Gv20499700.15 |
High | No | 2165 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -30.661 AMFE: -0.668 GC content %: 45.866 | |
| Atauschii_AET2Gv20499700.16 AET2Gv20499700.16 |
Low | No | 2596 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -30.239 AMFE: -0.671 GC content %: 45.069 | |
| Atauschii_AET2Gv20499700.19 AET2Gv20499700.19 |
High | No | 1806 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -31.573 AMFE: -0.674 GC content %: 46.844 | |
| Atauschii_AET2Gv20499700.2 AET2Gv20499700.2 |
High | No | 956 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -38.818 AMFE: -0.652 GC content %: 59.519 | |
| Atauschii_AET2Gv20499700.21 AET2Gv20499700.21 |
High | No | 557 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -41.508 AMFE: -0.628 GC content %: 66.068 | |
| Atauschii_AET2Gv20499700.24 AET2Gv20499700.24 |
High | No | 2169 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -30.751 AMFE: -0.680 GC content %: 45.228 | |
| Atauschii_AET2Gv20499700.25 AET2Gv20499700.25 |
High | No | 2185 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -30.778 AMFE: -0.681 GC content %: 45.217 | |
| Atauschii_AET2Gv20499700.26 AET2Gv20499700.26 |
Low | No | 2025 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -31.304 AMFE: -0.665 GC content %: 47.062 | |
| Atauschii_AET2Gv20499700.29 AET2Gv20499700.29 |
Low | No | 2315 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.113 Folding energies... MFEI: -30.514 AMFE: -0.677 GC content %: 45.054 | |
| Atauschii_AET2Gv20499700.30 AET2Gv20499700.30 |
Low | No | 2147 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.087 Folding energies... MFEI: -30.824 AMFE: -0.673 GC content %: 45.831 | |
| Atauschii_AET2Gv20499700.32 AET2Gv20499700.32 |
Low | No | 1708 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.049 Folding energies... MFEI: -32.365 AMFE: -0.674 GC content %: 48.009 | |
| Atauschii_AET2Gv20499700.34 AET2Gv20499700.34 |
High | No | 1414 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -33.331 AMFE: -0.692 GC content %: 48.161 | |
| Atauschii_AET2Gv20499700.35 AET2Gv20499700.35 |
Low | No | 1612 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.081 Folding energies... MFEI: -29.733 AMFE: -0.687 GC content %: 43.300 | |
| Atauschii_AET2Gv20499700.41 AET2Gv20499700.41 |
Low | No | 1956 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.074 Folding energies... MFEI: -25.808 AMFE: -0.667 GC content %: 38.701 | |
| Atauschii_AET2Gv20499700.42 AET2Gv20499700.42 |
Low | No | 1174 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -26.320 AMFE: -0.665 GC content %: 39.608 | |
| Atauschii_AET2Gv20499700.44 AET2Gv20499700.44 |
Low | No | 1813 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -25.455 AMFE: -0.683 GC content %: 37.286 | |
| Atauschii_AET2Gv20499700.7 AET2Gv20499700.7 |
High | No | 1642 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -32.454 AMFE: -0.670 GC content %: 48.417 | |
| Atauschii_AET2Gv20499700.8 AET2Gv20499700.8 |
Low | No | 2341 | OG0000393 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -31.043 AMFE: -0.677 GC content %: 45.835 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20499700.42 | SwissProt | 2021-04-01 | P93736 | 1.04e-32 |
| Atauschii_AET2Gv20499700.29 | SwissProt | 2021-04-01 | P93736 | 1.08e-30 |
| Atauschii_AET2Gv20499700.44 | SwissProt | 2021-04-01 | P93736 | 1.83e-16 |
| Atauschii_AET2Gv20499700.30 | SwissProt | 2021-04-01 | P93736 | 6.94e-31 |
| Atauschii_AET2Gv20499700.8 | SwissProt | 2021-04-01 | P93736 | 7.92e-11 |
| Atauschii_AET2Gv20499700.32 | SwissProt | 2021-04-01 | P93736 | 1.91e-31 |
| Atauschii_AET2Gv20499700.35 | SwissProt | 2021-04-01 | P93736 | 1.43e-31 |
| Atauschii_AET2Gv20499700.16 | SwissProt | 2021-04-01 | P93736 | 3.13e-32 |
| Atauschii_AET2Gv20499700.41 | SwissProt | 2021-04-01 | P93736 | 4.34e-31 |
| Atauschii_AET2Gv20499700.26 | SwissProt | 2021-04-01 | P93736 | 5.21e-31 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
