Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20508200 [ AET2Gv20508200] |
2D | 239785751 | 239794056 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20508200.12 AET2Gv20508200.12 |
Low | No | 312 | OG0070400 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -34.295 AMFE: -0.569 GC content %: 60.256 | |
Atauschii_AET2Gv20508200.2 AET2Gv20508200.2 |
Low | No | 231 | OG0070401 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -33.680 AMFE: -0.560 GC content %: 60.173 | |
Atauschii_AET2Gv20508200.3 AET2Gv20508200.3 |
Low | No | 987 | OG0070402 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -34.154 AMFE: -0.615 GC content %: 55.522 | |
Atauschii_AET2Gv20508200.9 AET2Gv20508200.9 |
Low | No | 407 | OG0070403 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -33.587 AMFE: -0.574 GC content %: 58.477 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20508200.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Atauschii_AET2Gv20508200.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Atauschii_AET2Gv20508200.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Atauschii_AET2Gv20508200.2 | SwissProt | 2021-04-01 | P92555 | 9.53e-6 |
Atauschii_AET2Gv20508200.3 | SwissProt | 2021-04-01 | P0C2F6 | 1.25e-6 |
Atauschii_AET2Gv20508200.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |