Atauschii AET2Gv20516300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20516300 [ AET2Gv20516300] |
2D | 247577411 | 247581035 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20516300.1 AET2Gv20516300.1 |
Low | No | 669 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.160 Folding energies... MFEI: -34.738 AMFE: -0.647 GC content %: 53.662 | |
| Atauschii_AET2Gv20516300.10 AET2Gv20516300.10 |
Low | No | 1300 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -30.038 AMFE: -0.510 GC content %: 58.923 | |
| Atauschii_AET2Gv20516300.11 AET2Gv20516300.11 |
Low | No | 1544 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.268 Folding energies... MFEI: -32.040 AMFE: -0.535 GC content %: 59.845 | |
| Atauschii_AET2Gv20516300.14 AET2Gv20516300.14 |
Low | No | 1688 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -31.511 AMFE: -0.530 GC content %: 59.479 | |
| Atauschii_AET2Gv20516300.18 AET2Gv20516300.18 |
High | No | 677 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -32.555 AMFE: -0.604 GC content %: 53.914 | |
| Atauschii_AET2Gv20516300.19 AET2Gv20516300.19 |
High | No | 473 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -32.389 AMFE: -0.557 GC content %: 58.140 | |
| Atauschii_AET2Gv20516300.20 AET2Gv20516300.20 |
High | No | 615 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -1.366 Folding energies... MFEI: -32.439 AMFE: -0.551 GC content %: 58.862 | |
| Atauschii_AET2Gv20516300.4 AET2Gv20516300.4 |
Low | No | 810 | OG0002871 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -34.802 AMFE: -0.641 GC content %: 54.321 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20516300.11 | SwissProt | 2021-04-01 | Q6K991 | 5.61e-11 |
| Atauschii_AET2Gv20516300.14 | SwissProt | 2021-04-01 | Q6K991 | 6.75e-11 |
| Atauschii_AET2Gv20516300.4 | SwissProt | 2021-04-01 | Q6K991 | 7.52e-7 |
| Atauschii_AET2Gv20516300.1 | SwissProt | 2021-04-01 | Q6K991 | 2.52e-12 |
| Atauschii_AET2Gv20516300.10 | SwissProt | 2021-04-01 | Q6K991 | 3.67e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
