Atauschii AET2Gv20526400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20526400 [ AET2Gv20526400] |
2D | 264783435 | 264793324 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20526400.12 AET2Gv20526400.12 |
High | No | 1196 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -24.356 AMFE: -0.535 GC content %: 45.485 | |
| Atauschii_AET2Gv20526400.18 AET2Gv20526400.18 |
High | No | 1614 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -19.523 AMFE: -0.514 GC content %: 37.980 | |
| Atauschii_AET2Gv20526400.19 AET2Gv20526400.19 |
High | No | 1860 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -19.914 AMFE: -0.542 GC content %: 36.774 | |
| Atauschii_AET2Gv20526400.28 AET2Gv20526400.28 |
High | No | 1489 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -21.202 AMFE: -0.571 GC content %: 37.139 | |
| Atauschii_AET2Gv20526400.33 AET2Gv20526400.33 |
High | No | 1327 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -21.025 AMFE: -0.571 GC content %: 36.850 | |
| Atauschii_AET2Gv20526400.35 AET2Gv20526400.35 |
High | No | 1064 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -25.752 AMFE: -0.706 GC content %: 36.466 | |
| Atauschii_AET2Gv20526400.39 AET2Gv20526400.39 |
High | No | 815 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -19.975 AMFE: -0.544 GC content %: 36.687 | |
| Atauschii_AET2Gv20526400.4 AET2Gv20526400.4 |
High | No | 1547 | OG0002872 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -24.273 AMFE: -0.559 GC content %: 43.439 | |
| Atauschii_AET2Gv20526400.41 AET2Gv20526400.41 |
High | No | 1645 | OG0009808 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -34.049 AMFE: -0.717 GC content %: 47.477 | |
| Atauschii_AET2Gv20526400.42 AET2Gv20526400.42 |
High | No | 1705 | OG0009808 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -33.490 AMFE: -0.705 GC content %: 47.507 | |
| Atauschii_AET2Gv20526400.43 AET2Gv20526400.43 |
High | No | 1090 | OG0009808 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -36.413 AMFE: -0.682 GC content %: 53.394 | |
| Atauschii_AET2Gv20526400.44 AET2Gv20526400.44 |
High | No | 1420 | OG0009808 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -28.789 AMFE: -0.665 GC content %: 43.310 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
