GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20531700 [ AET2Gv20531700]	2D	269939494	269954798	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20531700.10 AET2Gv20531700.10	High	No	460	OG0070441		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -24.891 AMFE: -0.626 GC content %: 39.783
Atauschii_AET2Gv20531700.11 AET2Gv20531700.11	High	No	263	OG0002873		Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -33.688 AMFE: -0.564 GC content %: 59.696
Atauschii_AET2Gv20531700.4 AET2Gv20531700.4	High	No	1306	OG0002873		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -32.802 AMFE: -0.680 GC content %: 48.239
Atauschii_AET2Gv20531700.7 AET2Gv20531700.7	High	No	1235	OG0002873		Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -24.615 AMFE: -0.602 GC content %: 40.891
Atauschii_AET2Gv20531700.9 AET2Gv20531700.9	High	No	1890	OG0002873		Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -25.571 AMFE: -0.654 GC content %: 39.101

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).