Atauschii AET2Gv20564900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20564900 [ AET2Gv20564900] |
2D | 300058043 | 300071387 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20564900.1 AET2Gv20564900.1 |
Low | No | 1818 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.045 Folding energies... MFEI: -28.784 AMFE: -0.642 GC content %: 44.829 | |
| Atauschii_AET2Gv20564900.10 AET2Gv20564900.10 |
Low | No | 2798 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -28.574 AMFE: -0.661 GC content %: 43.209 | |
| Atauschii_AET2Gv20564900.11 AET2Gv20564900.11 |
Low | No | 2300 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.228 Folding energies... MFEI: -29.491 AMFE: -0.670 GC content %: 44.043 | |
| Atauschii_AET2Gv20564900.12 AET2Gv20564900.12 |
Low | No | 958 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.169 Folding energies... MFEI: -30.543 AMFE: -0.627 GC content %: 48.747 | |
| Atauschii_AET2Gv20564900.13 AET2Gv20564900.13 |
Low | No | 2089 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -26.796 AMFE: -0.659 GC content %: 40.689 | |
| Atauschii_AET2Gv20564900.14 AET2Gv20564900.14 |
High | No | 789 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -33.105 AMFE: -0.615 GC content %: 53.866 | |
| Atauschii_AET2Gv20564900.15 AET2Gv20564900.15 |
Low | No | 1510 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -28.927 AMFE: -0.664 GC content %: 43.576 | |
| Atauschii_AET2Gv20564900.16 AET2Gv20564900.16 |
Low | No | 1068 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -30.084 AMFE: -0.653 GC content %: 46.067 | |
| Atauschii_AET2Gv20564900.17 AET2Gv20564900.17 |
Low | No | 1927 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -27.281 AMFE: -0.661 GC content %: 41.256 | |
| Atauschii_AET2Gv20564900.18 AET2Gv20564900.18 |
Low | No | 3083 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -28.556 AMFE: -0.683 GC content %: 41.810 | |
| Atauschii_AET2Gv20564900.19 AET2Gv20564900.19 |
Low | No | 1188 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -29.907 AMFE: -0.663 GC content %: 45.118 | |
| Atauschii_AET2Gv20564900.2 AET2Gv20564900.2 |
Low | No | 1704 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.211 Folding energies... MFEI: -27.183 AMFE: -0.641 GC content %: 42.430 | |
| Atauschii_AET2Gv20564900.20 AET2Gv20564900.20 |
Low | No | 2294 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.251 Folding energies... MFEI: -26.795 AMFE: -0.664 GC content %: 40.366 | |
| Atauschii_AET2Gv20564900.23 AET2Gv20564900.23 |
Low | No | 946 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -32.632 AMFE: -0.649 GC content %: 50.317 | |
| Atauschii_AET2Gv20564900.24 AET2Gv20564900.24 |
Low | No | 1773 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.050 Folding energies... MFEI: -28.032 AMFE: -0.657 GC content %: 42.640 | |
| Atauschii_AET2Gv20564900.25 AET2Gv20564900.25 |
Low | No | 1514 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -28.170 AMFE: -0.689 GC content %: 40.885 | |
| Atauschii_AET2Gv20564900.26 AET2Gv20564900.26 |
Low | No | 2099 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -26.121 AMFE: -0.674 GC content %: 38.733 | |
| Atauschii_AET2Gv20564900.27 AET2Gv20564900.27 |
Low | No | 2071 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -26.049 AMFE: -0.663 GC content %: 39.305 | |
| Atauschii_AET2Gv20564900.3 AET2Gv20564900.3 |
Low | No | 2185 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -28.883 AMFE: -0.661 GC content %: 43.707 | |
| Atauschii_AET2Gv20564900.4 AET2Gv20564900.4 |
Low | No | 2056 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -27.936 AMFE: -0.638 GC content %: 43.774 | |
| Atauschii_AET2Gv20564900.5 AET2Gv20564900.5 |
Low | No | 1712 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -27.255 AMFE: -0.652 GC content %: 41.822 | |
| Atauschii_AET2Gv20564900.6 AET2Gv20564900.6 |
Low | No | 2189 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -26.938 AMFE: -0.659 GC content %: 40.886 | |
| Atauschii_AET2Gv20564900.7 AET2Gv20564900.7 |
Low | No | 1866 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -26.833 AMFE: -0.650 GC content %: 41.265 | |
| Atauschii_AET2Gv20564900.8 AET2Gv20564900.8 |
Low | No | 2217 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -26.413 AMFE: -0.652 GC content %: 40.505 | |
| Atauschii_AET2Gv20564900.9 AET2Gv20564900.9 |
Low | No | 1790 | OG0000292 | Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -27.369 AMFE: -0.645 GC content %: 42.402 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20564900.11 | SwissProt | 2021-04-01 | Q8W3Z2 | 4.11e-16 |
| Atauschii_AET2Gv20564900.4 | SwissProt | 2021-04-01 | Q8W3Z2 | 1.24e-13 |
| Atauschii_AET2Gv20564900.24 | SwissProt | 2021-04-01 | Q8W3Z2 | 1.04e-13 |
| Atauschii_AET2Gv20564900.18 | SwissProt | 2021-04-01 | Q8W3Z2 | 5.69e-16 |
| Atauschii_AET2Gv20564900.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET2Gv20564900.12 | SwissProt | 2021-04-01 | Q8W3Z2 | 2.21e-13 |
| Atauschii_AET2Gv20564900.5 | SwissProt | 2021-04-01 | Q8W3Z2 | 3.37e-13 |
| Atauschii_AET2Gv20564900.25 | SwissProt | 2021-04-01 | Q8W3Z2 | 2.52e-16 |
| Atauschii_AET2Gv20564900.19 | SwissProt | 2021-04-01 | Q8W3Z2 | 2.16e-14 |
| Atauschii_AET2Gv20564900.13 | SwissProt | 2021-04-01 | Q8W3Z2 | 4.25e-13 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
