GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20570100 [ AET2Gv20570100]	2D	303729655	303731162	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20570100.6 AET2Gv20570100.6	High	No	372	OG0016017		Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -27.446 AMFE: -0.608 GC content %: 45.161
Atauschii_AET2Gv20570100.7 AET2Gv20570100.7	High	No	359	OG0016017		Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -28.802 AMFE: -0.634 GC content %: 45.404
Atauschii_AET2Gv20570100.8 AET2Gv20570100.8	High	No	317	OG0016017		Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -26.404 AMFE: -0.602 GC content %: 43.849

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).