Atauschii AET2Gv20579400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20579400 [ AET2Gv20579400] |
2D | 310745073 | 310753749 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20579400.1 AET2Gv20579400.1 |
High | No | 470 | OG0024676 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -37.872 AMFE: -0.576 GC content %: 65.745 | |
| Atauschii_AET2Gv20579400.12 AET2Gv20579400.12 |
Low | No | 344 | OG0024677 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -20.174 AMFE: -0.538 GC content %: 37.500 | |
| Atauschii_AET2Gv20579400.13 AET2Gv20579400.13 |
Low | No | 1833 | OG0070524 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -28.691 AMFE: -0.675 GC content %: 42.499 | |
| Atauschii_AET2Gv20579400.2 AET2Gv20579400.2 |
High | No | 374 | OG0024676 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -36.631 AMFE: -0.552 GC content %: 66.310 | |
| Atauschii_AET2Gv20579400.6 AET2Gv20579400.6 |
Low | No | 719 | OG0024677 | Get ORF Coding potential... Type: noncoding Potential: -1.045 Folding energies... MFEI: -26.342 AMFE: -0.599 GC content %: 43.950 | |
| Atauschii_AET2Gv20579400.9 AET2Gv20579400.9 |
Low | No | 498 | OG0070525 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -24.116 AMFE: -0.541 GC content %: 44.578 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20579400.9 | SwissProt | 2021-04-01 | A0Q1R3 | 5.64e-8 |
| Atauschii_AET2Gv20579400.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA; DNA/TcMar-Stowaway | |
| Atauschii_AET2Gv20579400.12 | SwissProt | 2021-04-01 | A1KR91 | 2.5e-9 |
| Atauschii_AET2Gv20579400.6 | SwissProt | 2021-04-01 | P25686 | 3.57e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
