Atauschii AET2Gv20579700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20579700 [ AET2Gv20579700] |
2D | 310760545 | 310778291 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20579700.1 AET2Gv20579700.1 |
High | No | 363 | OG0070527 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -25.262 AMFE: -0.427 GC content %: 59.229 | |
| Atauschii_AET2Gv20579700.10 AET2Gv20579700.10 |
Low | No | 1025 | OG0009809 | Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -31.766 AMFE: -0.641 GC content %: 49.561 | |
| Atauschii_AET2Gv20579700.13 AET2Gv20579700.13 |
High | No | 1799 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -29.855 AMFE: -0.668 GC content %: 44.691 | |
| Atauschii_AET2Gv20579700.14 AET2Gv20579700.14 |
High | No | 2289 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -30.188 AMFE: -0.677 GC content %: 44.561 | |
| Atauschii_AET2Gv20579700.16 AET2Gv20579700.16 |
High | No | 1489 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -31.155 AMFE: -0.680 GC content %: 45.803 | |
| Atauschii_AET2Gv20579700.17 AET2Gv20579700.17 |
High | No | 1433 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -27.460 AMFE: -0.658 GC content %: 41.731 | |
| Atauschii_AET2Gv20579700.20 AET2Gv20579700.20 |
High | No | 1696 | OG0001288 | Get ORF Coding potential... Type: noncoding Potential: -1.411 Folding energies... MFEI: -27.317 AMFE: -0.659 GC content %: 41.450 | |
| Atauschii_AET2Gv20579700.8 AET2Gv20579700.8 |
High | No | 1023 | OG0009809 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -32.317 AMFE: -0.655 GC content %: 49.365 | |
| Atauschii_AET2Gv20579700.9 AET2Gv20579700.9 |
High | No | 886 | OG0009809 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -32.156 AMFE: -0.653 GC content %: 49.210 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20579700.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
