Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20593800 [ AET2Gv20593800] |
2D | 321557489 | 321560634 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv20593800.1 AET2Gv20593800.1 |
Low | Yes | 2849 | OG0006839 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -30.204 AMFE: -0.687 GC content %: 43.945 | |
Atauschii_AET2Gv20593800.2 AET2Gv20593800.2 |
Low | Yes | 2525 | OG0006839 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -31.671 AMFE: -0.700 GC content %: 45.267 | |
Atauschii_AET2Gv20593800.3 AET2Gv20593800.3 |
Low | Yes | 3027 | OG0006839 | Get ORF Coding potential... Type: noncoding Potential: -0.914 Folding energies... MFEI: -28.755 AMFE: -0.670 GC content %: 42.914 | |
Atauschii_AET2Gv20593800.4 AET2Gv20593800.4 |
Low | Yes | 2616 | OG0006839 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -29.285 AMFE: -0.683 GC content %: 42.890 | |
Atauschii_AET2Gv20593800.5 AET2Gv20593800.5 |
Low | Yes | 2530 | OG0006839 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.656 AMFE: -0.688 GC content %: 44.585 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv20593800.2 | Rfam | 14.6 | MIR1122 | 0.0016 |
Atauschii_AET2Gv20593800.3 | Rfam | 14.6 | MIR1122 | 0.0019 |
Atauschii_AET2Gv20593800.4 | Rfam | 14.6 | MIR1122 | 0.0016 |
Atauschii_AET2Gv20593800.5 | Rfam | 14.6 | MIR1122 | 0.0016 |
Atauschii_AET2Gv20593800.1 | Rfam | 14.6 | MIR1122 | 0.0018 |