Atauschii AET2Gv20622400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20622400 [ AET2Gv20622400] |
2D | 341778803 | 341781407 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20622400.10 AET2Gv20622400.10 |
Low | No | 2200 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -29.968 AMFE: -0.656 GC content %: 45.682 | |
| Atauschii_AET2Gv20622400.11 AET2Gv20622400.11 |
Low | No | 2326 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -29.626 AMFE: -0.655 GC content %: 45.228 | |
| Atauschii_AET2Gv20622400.14 AET2Gv20622400.14 |
High | No | 1534 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -30.078 AMFE: -0.640 GC content %: 47.001 | |
| Atauschii_AET2Gv20622400.15 AET2Gv20622400.15 |
Low | No | 1994 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -30.055 AMFE: -0.651 GC content %: 46.189 | |
| Atauschii_AET2Gv20622400.16 AET2Gv20622400.16 |
Low | No | 2028 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -29.379 AMFE: -0.646 GC content %: 45.513 | |
| Atauschii_AET2Gv20622400.18 AET2Gv20622400.18 |
Low | No | 2120 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -29.344 AMFE: -0.653 GC content %: 44.906 | |
| Atauschii_AET2Gv20622400.19 AET2Gv20622400.19 |
High | No | 1605 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -31.028 AMFE: -0.655 GC content %: 47.352 | |
| Atauschii_AET2Gv20622400.2 AET2Gv20622400.2 |
Low | No | 2244 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -28.859 AMFE: -0.648 GC content %: 44.563 | |
| Atauschii_AET2Gv20622400.22 AET2Gv20622400.22 |
High | No | 1330 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -32.541 AMFE: -0.643 GC content %: 50.602 | |
| Atauschii_AET2Gv20622400.23 AET2Gv20622400.23 |
High | No | 1239 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -31.646 AMFE: -0.630 GC content %: 50.202 | |
| Atauschii_AET2Gv20622400.5 AET2Gv20622400.5 |
Low | No | 1426 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -27.707 AMFE: -0.639 GC content %: 43.338 | |
| Atauschii_AET2Gv20622400.6 AET2Gv20622400.6 |
High | No | 1738 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -30.242 AMFE: -0.646 GC content %: 46.835 | |
| Atauschii_AET2Gv20622400.9 AET2Gv20622400.9 |
High | No | 1641 | OG0001147 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -29.074 AMFE: -0.630 GC content %: 46.130 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20622400.18 | SwissProt | 2021-04-01 | Q6Q151 | 5.73e-4 |
| Atauschii_AET2Gv20622400.2 | SwissProt | 2021-04-01 | Q6Q151 | 6.16e-4 |
| Atauschii_AET2Gv20622400.10 | SwissProt | 2021-04-01 | Q6Q151 | 6.01e-4 |
| Atauschii_AET2Gv20622400.5 | SwissProt | 2021-04-01 | Q6Q151 | 3.26e-4 |
| Atauschii_AET2Gv20622400.11 | SwissProt | 2021-04-01 | Q6Q151 | 6.45e-4 |
| Atauschii_AET2Gv20622400.15 | SwissProt | 2021-04-01 | Q6Q151 | 5.28e-4 |
| Atauschii_AET2Gv20622400.16 | SwissProt | 2021-04-01 | Q6Q151 | 5.39e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
