Atauschii AET2Gv20625000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20625000 [ AET2Gv20625000] |
2D | 343286071 | 343300283 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20625000.16 AET2Gv20625000.16 |
High | No | 4099 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -33.494 AMFE: -0.689 GC content %: 48.597 | |
| Atauschii_AET2Gv20625000.18 AET2Gv20625000.18 |
High | No | 4243 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -33.135 AMFE: -0.688 GC content %: 48.126 | |
| Atauschii_AET2Gv20625000.19 AET2Gv20625000.19 |
High | No | 4503 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -32.387 AMFE: -0.682 GC content %: 47.479 | |
| Atauschii_AET2Gv20625000.20 AET2Gv20625000.20 |
High | No | 4525 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -32.378 AMFE: -0.682 GC content %: 47.448 | |
| Atauschii_AET2Gv20625000.26 AET2Gv20625000.26 |
High | No | 4378 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -32.565 AMFE: -0.684 GC content %: 47.624 | |
| Atauschii_AET2Gv20625000.27 AET2Gv20625000.27 |
High | No | 4442 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -32.461 AMFE: -0.683 GC content %: 47.524 | |
| Atauschii_AET2Gv20625000.28 AET2Gv20625000.28 |
High | No | 4456 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -31.928 AMFE: -0.693 GC content %: 46.073 | |
| Atauschii_AET2Gv20625000.32 AET2Gv20625000.32 |
High | No | 1616 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -28.781 AMFE: -0.663 GC content %: 43.441 | |
| Atauschii_AET2Gv20625000.37 AET2Gv20625000.37 |
High | No | 952 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -28.855 AMFE: -0.636 GC content %: 45.378 | |
| Atauschii_AET2Gv20625000.38 AET2Gv20625000.38 |
High | No | 1312 | OG0006843 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -30.046 AMFE: -0.687 GC content %: 43.750 | |
| Atauschii_AET2Gv20625000.39 AET2Gv20625000.39 |
High | No | 656 | OG0006843 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -29.146 AMFE: -0.648 GC content %: 44.970 | |
| Atauschii_AET2Gv20625000.42 AET2Gv20625000.42 |
High | No | 1146 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -26.449 AMFE: -0.609 GC content %: 43.455 | |
| Atauschii_AET2Gv20625000.44 AET2Gv20625000.44 |
High | No | 491 | OG0001545 | Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -25.336 AMFE: -0.563 GC content %: 45.010 | |
| Atauschii_AET2Gv20625000.46 AET2Gv20625000.46 |
High | No | 424 | OG0000988 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -21.415 AMFE: -0.470 GC content %: 45.519 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
