Atauschii AET2Gv20634600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20634600 [ AET2Gv20634600] |
2D | 349371219 | 349376226 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20634600.1 AET2Gv20634600.1 |
Low | No | 2259 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -26.937 AMFE: -0.590 GC content %: 45.640 | |
| Atauschii_AET2Gv20634600.10 AET2Gv20634600.10 |
Low | No | 3191 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -26.612 AMFE: -0.614 GC content %: 43.341 | |
| Atauschii_AET2Gv20634600.11 AET2Gv20634600.11 |
Low | No | 3866 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -26.376 AMFE: -0.631 GC content %: 41.826 | |
| Atauschii_AET2Gv20634600.12 AET2Gv20634600.12 |
Low | No | 4301 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -26.150 AMFE: -0.637 GC content %: 41.037 | |
| Atauschii_AET2Gv20634600.13 AET2Gv20634600.13 |
Low | No | 3760 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -26.412 AMFE: -0.635 GC content %: 41.569 | |
| Atauschii_AET2Gv20634600.14 AET2Gv20634600.14 |
Low | No | 4058 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -25.981 AMFE: -0.629 GC content %: 41.276 | |
| Atauschii_AET2Gv20634600.15 AET2Gv20634600.15 |
Low | No | 2695 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -27.109 AMFE: -0.610 GC content %: 44.453 | |
| Atauschii_AET2Gv20634600.16 AET2Gv20634600.16 |
Low | No | 2705 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -26.980 AMFE: -0.612 GC content %: 44.104 | |
| Atauschii_AET2Gv20634600.17 AET2Gv20634600.17 |
Low | No | 2395 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -27.182 AMFE: -0.616 GC content %: 44.092 | |
| Atauschii_AET2Gv20634600.18 AET2Gv20634600.18 |
Low | No | 4369 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -25.949 AMFE: -0.634 GC content %: 40.925 | |
| Atauschii_AET2Gv20634600.19 AET2Gv20634600.19 |
Low | No | 1509 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -23.612 AMFE: -0.608 GC content %: 38.834 | |
| Atauschii_AET2Gv20634600.2 AET2Gv20634600.2 |
Low | No | 3285 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -25.890 AMFE: -0.604 GC content %: 42.861 | |
| Atauschii_AET2Gv20634600.20 AET2Gv20634600.20 |
Low | No | 579 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -24.974 AMFE: -0.563 GC content %: 44.387 | |
| Atauschii_AET2Gv20634600.21 AET2Gv20634600.21 |
Low | No | 2252 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -23.490 AMFE: -0.644 GC content %: 36.501 | |
| Atauschii_AET2Gv20634600.3 AET2Gv20634600.3 |
Low | No | 3624 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -26.526 AMFE: -0.637 GC content %: 41.639 | |
| Atauschii_AET2Gv20634600.4 AET2Gv20634600.4 |
Low | No | 1909 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -26.920 AMFE: -0.574 GC content %: 46.883 | |
| Atauschii_AET2Gv20634600.5 AET2Gv20634600.5 |
Low | No | 1370 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.394 AMFE: -0.555 GC content %: 51.168 | |
| Atauschii_AET2Gv20634600.6 AET2Gv20634600.6 |
Low | No | 2585 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -27.017 AMFE: -0.616 GC content %: 43.830 | |
| Atauschii_AET2Gv20634600.7 AET2Gv20634600.7 |
Low | No | 4303 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -26.161 AMFE: -0.631 GC content %: 41.483 | |
| Atauschii_AET2Gv20634600.8 AET2Gv20634600.8 |
Low | No | 3489 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -26.933 AMFE: -0.632 GC content %: 42.648 | |
| Atauschii_AET2Gv20634600.9 AET2Gv20634600.9 |
Low | No | 2856 | OG0000440 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -26.653 AMFE: -0.603 GC content %: 44.188 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20634600.20 | SwissProt | 2021-04-01 | Q9ZUL5 | 1.28e-9 |
| Atauschii_AET2Gv20634600.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac; RC/Helitron | |
| Atauschii_AET2Gv20634600.16 | SwissProt | 2021-04-01 | Q9ZUL5 | 1.16e-4 |
| Atauschii_AET2Gv20634600.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac; RC/Helitron | |
| Atauschii_AET2Gv20634600.11 | SwissProt | 2021-04-01 | Q9M1S3 | 3.08e-8 |
| Atauschii_AET2Gv20634600.8 | SwissProt | 2021-04-01 | Q9ZUL5 | 3.0e-5 |
| Atauschii_AET2Gv20634600.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac; RC/Helitron | |
| Atauschii_AET2Gv20634600.3 | SwissProt | 2021-04-01 | Q9ZUL5 | 1.66e-4 |
| Atauschii_AET2Gv20634600.19 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET2Gv20634600.17 | SwissProt | 2021-04-01 | Q9ZUL5 | 9.94e-5 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
