GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20657800 [ AET2Gv20657800]	2D	367091585	367096391	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20657800.1 AET2Gv20657800.1	Low	No	4108	OG0070649		Get ORF Coding potential... Type: noncoding Potential: -0.019 Folding energies... MFEI: -27.140 AMFE: -0.692 GC content %: 39.241
Atauschii_AET2Gv20657800.26 AET2Gv20657800.26	High	No	442	OG0024695		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -31.403 AMFE: -0.593 GC content %: 52.941
Atauschii_AET2Gv20657800.27 AET2Gv20657800.27	High	No	251	OG0024695		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -25.088 AMFE: -0.460 GC content %: 54.582

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20657800.1	SwissProt	2021-04-01	Q8LFG1	7.23e-4

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).