Atauschii AET2Gv20658400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20658400 [ AET2Gv20658400] |
2D | 368128272 | 368133009 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20658400.1 AET2Gv20658400.1 |
Low | No | 1953 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -31.248 AMFE: -0.595 GC content %: 52.483 | |
| Atauschii_AET2Gv20658400.10 AET2Gv20658400.10 |
Low | No | 1215 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -34.914 AMFE: -0.595 GC content %: 58.683 | |
| Atauschii_AET2Gv20658400.11 AET2Gv20658400.11 |
Low | No | 943 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.099 Folding energies... MFEI: -35.472 AMFE: -0.661 GC content %: 53.659 | |
| Atauschii_AET2Gv20658400.12 AET2Gv20658400.12 |
Low | No | 961 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.277 Folding energies... MFEI: -35.151 AMFE: -0.664 GC content %: 52.966 | |
| Atauschii_AET2Gv20658400.13 AET2Gv20658400.13 |
Low | No | 1979 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -28.949 AMFE: -0.669 GC content %: 43.254 | |
| Atauschii_AET2Gv20658400.14 AET2Gv20658400.14 |
Low | No | 1294 | OG0006845 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -31.731 AMFE: -0.650 GC content %: 48.841 | |
| Atauschii_AET2Gv20658400.15 AET2Gv20658400.15 |
Low | No | 1460 | OG0006845 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -30.247 AMFE: -0.632 GC content %: 47.877 | |
| Atauschii_AET2Gv20658400.16 AET2Gv20658400.16 |
Low | No | 847 | OG0006845 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -30.248 AMFE: -0.600 GC content %: 50.413 | |
| Atauschii_AET2Gv20658400.17 AET2Gv20658400.17 |
Low | No | 653 | OG0006845 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -32.848 AMFE: -0.640 GC content %: 51.302 | |
| Atauschii_AET2Gv20658400.18 AET2Gv20658400.18 |
Low | No | 654 | OG0006845 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -24.954 AMFE: -0.596 GC content %: 41.896 | |
| Atauschii_AET2Gv20658400.2 AET2Gv20658400.2 |
Low | No | 1271 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -33.971 AMFE: -0.581 GC content %: 58.458 | |
| Atauschii_AET2Gv20658400.3 AET2Gv20658400.3 |
Low | No | 1261 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -33.844 AMFE: -0.580 GC content %: 58.366 | |
| Atauschii_AET2Gv20658400.4 AET2Gv20658400.4 |
Low | No | 673 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -32.848 AMFE: -0.473 GC content %: 69.391 | |
| Atauschii_AET2Gv20658400.5 AET2Gv20658400.5 |
Low | No | 734 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -33.211 AMFE: -0.494 GC content %: 67.166 | |
| Atauschii_AET2Gv20658400.6 AET2Gv20658400.6 |
Low | No | 1584 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -33.264 AMFE: -0.615 GC content %: 54.104 | |
| Atauschii_AET2Gv20658400.7 AET2Gv20658400.7 |
Low | No | 1879 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.362 Folding energies... MFEI: -32.006 AMFE: -0.619 GC content %: 51.730 | |
| Atauschii_AET2Gv20658400.8 AET2Gv20658400.8 |
Low | No | 1496 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -33.770 AMFE: -0.607 GC content %: 55.615 | |
| Atauschii_AET2Gv20658400.9 AET2Gv20658400.9 |
Low | No | 1774 | OG0001149 | Get ORF Coding potential... Type: noncoding Potential: -0.385 Folding energies... MFEI: -32.785 AMFE: -0.619 GC content %: 52.988 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20658400.11 | SwissProt | 2021-04-01 | P55307 | 1.61e-12 |
| Atauschii_AET2Gv20658400.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv20658400.13 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET2Gv20658400.5 | SwissProt | 2021-04-01 | P55313 | 1.16e-12 |
| Atauschii_AET2Gv20658400.12 | SwissProt | 2021-04-01 | P55313 | 3.71e-12 |
| Atauschii_AET2Gv20658400.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv20658400.6 | SwissProt | 2021-04-01 | P55313 | 1.51e-11 |
| Atauschii_AET2Gv20658400.13 | SwissProt | 2021-04-01 | P55313 | 1.14e-7 |
| Atauschii_AET2Gv20658400.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tag1 | |
| Atauschii_AET2Gv20658400.7 | SwissProt | 2021-04-01 | P55307 | 6.9e-12 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
