Atauschii AET2Gv20659400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20659400 [ AET2Gv20659400] |
2D | 368964792 | 368969962 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20659400.1 AET2Gv20659400.1 |
High | No | 3051 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -29.027 AMFE: -0.648 GC content %: 44.805 | |
| Atauschii_AET2Gv20659400.10 AET2Gv20659400.10 |
High | No | 2828 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -28.999 AMFE: -0.634 GC content %: 45.757 | |
| Atauschii_AET2Gv20659400.15 AET2Gv20659400.15 |
High | No | 1625 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -31.963 AMFE: -0.598 GC content %: 53.477 | |
| Atauschii_AET2Gv20659400.16 AET2Gv20659400.16 |
High | No | 1461 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -30.082 AMFE: -0.564 GC content %: 53.320 | |
| Atauschii_AET2Gv20659400.20 AET2Gv20659400.20 |
High | No | 1872 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -31.683 AMFE: -0.619 GC content %: 51.175 | |
| Atauschii_AET2Gv20659400.21 AET2Gv20659400.21 |
High | No | 2577 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -28.064 AMFE: -0.651 GC content %: 43.112 | |
| Atauschii_AET2Gv20659400.22 AET2Gv20659400.22 |
High | No | 594 | OG0070652 | Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -21.481 AMFE: -0.608 GC content %: 35.354 | |
| Atauschii_AET2Gv20659400.26 AET2Gv20659400.26 |
High | No | 2086 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -28.595 AMFE: -0.633 GC content %: 45.158 | |
| Atauschii_AET2Gv20659400.7 AET2Gv20659400.7 |
High | No | 2339 | OG0002877 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -30.650 AMFE: -0.635 GC content %: 48.268 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
