GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20662000 [ AET2Gv20662000]	2D	370739787	370750422	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20662000.1 AET2Gv20662000.1	High	No	1082	OG0070656		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -35.795 AMFE: -0.651 GC content %: 54.991
Atauschii_AET2Gv20662000.16 AET2Gv20662000.16	High	No	1025	OG0070657		Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -26.875 AMFE: -0.625 GC content %: 43.024
Atauschii_AET2Gv20662000.21 AET2Gv20662000.21	High	No	428	OG0024698		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -33.178 AMFE: -0.645 GC content %: 51.402

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).