Atauschii AET2Gv20688800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20688800 [ AET2Gv20688800] |
2D | 385603811 | 385613318 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20688800.1 AET2Gv20688800.1 |
High | No | 2656 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -21.863 AMFE: -0.590 GC content %: 37.048 | |
| Atauschii_AET2Gv20688800.10 AET2Gv20688800.10 |
High | No | 2337 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -22.229 AMFE: -0.591 GC content %: 37.612 | |
| Atauschii_AET2Gv20688800.11 AET2Gv20688800.11 |
High | No | 2323 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -23.117 AMFE: -0.566 GC content %: 40.852 | |
| Atauschii_AET2Gv20688800.12 AET2Gv20688800.12 |
High | No | 2407 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -22.730 AMFE: -0.566 GC content %: 40.174 | |
| Atauschii_AET2Gv20688800.13 AET2Gv20688800.13 |
High | No | 1029 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -26.550 AMFE: -0.562 GC content %: 47.230 | |
| Atauschii_AET2Gv20688800.14 AET2Gv20688800.14 |
High | No | 792 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -24.495 AMFE: -0.543 GC content %: 45.076 | |
| Atauschii_AET2Gv20688800.15 AET2Gv20688800.15 |
High | No | 1241 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -27.035 AMFE: -0.581 GC content %: 46.495 | |
| Atauschii_AET2Gv20688800.16 AET2Gv20688800.16 |
High | No | 1218 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.167 AMFE: -0.591 GC content %: 45.977 | |
| Atauschii_AET2Gv20688800.17 AET2Gv20688800.17 |
High | No | 2364 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -22.644 AMFE: -0.566 GC content %: 39.975 | |
| Atauschii_AET2Gv20688800.18 AET2Gv20688800.18 |
High | No | 931 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -27.863 AMFE: -0.580 GC content %: 48.013 | |
| Atauschii_AET2Gv20688800.19 AET2Gv20688800.19 |
High | No | 2189 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -22.969 AMFE: -0.564 GC content %: 40.704 | |
| Atauschii_AET2Gv20688800.2 AET2Gv20688800.2 |
High | No | 2705 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -24.033 AMFE: -0.601 GC content %: 39.963 | |
| Atauschii_AET2Gv20688800.20 AET2Gv20688800.20 |
High | No | 995 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -27.447 AMFE: -0.581 GC content %: 47.236 | |
| Atauschii_AET2Gv20688800.21 AET2Gv20688800.21 |
High | No | 1991 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -21.828 AMFE: -0.561 GC content %: 38.925 | |
| Atauschii_AET2Gv20688800.22 AET2Gv20688800.22 |
High | No | 2266 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -23.142 AMFE: -0.574 GC content %: 40.291 | |
| Atauschii_AET2Gv20688800.23 AET2Gv20688800.23 |
High | No | 2299 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -22.988 AMFE: -0.574 GC content %: 40.061 | |
| Atauschii_AET2Gv20688800.24 AET2Gv20688800.24 |
High | No | 1039 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -26.583 AMFE: -0.559 GC content %: 47.546 | |
| Atauschii_AET2Gv20688800.25 AET2Gv20688800.25 |
High | No | 3702 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -22.245 AMFE: -0.593 GC content %: 37.493 | |
| Atauschii_AET2Gv20688800.26 AET2Gv20688800.26 |
High | No | 1286 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -25.303 AMFE: -0.552 GC content %: 45.801 | |
| Atauschii_AET2Gv20688800.27 AET2Gv20688800.27 |
High | No | 645 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -28.512 AMFE: -0.619 GC content %: 46.047 | |
| Atauschii_AET2Gv20688800.28 AET2Gv20688800.28 |
High | No | 2108 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -22.059 AMFE: -0.586 GC content %: 37.619 | |
| Atauschii_AET2Gv20688800.29 AET2Gv20688800.29 |
High | No | 950 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -22.958 AMFE: -0.552 GC content %: 41.579 | |
| Atauschii_AET2Gv20688800.3 AET2Gv20688800.3 |
High | No | 2590 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -22.992 AMFE: -0.571 GC content %: 40.270 | |
| Atauschii_AET2Gv20688800.30 AET2Gv20688800.30 |
High | No | 994 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -20.493 AMFE: -0.503 GC content %: 40.744 | |
| Atauschii_AET2Gv20688800.4 AET2Gv20688800.4 |
High | No | 2425 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -23.720 AMFE: -0.590 GC content %: 40.206 | |
| Atauschii_AET2Gv20688800.5 AET2Gv20688800.5 |
High | No | 992 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -28.790 AMFE: -0.599 GC content %: 48.085 | |
| Atauschii_AET2Gv20688800.6 AET2Gv20688800.6 |
High | No | 2560 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -25.402 AMFE: -0.609 GC content %: 41.719 | |
| Atauschii_AET2Gv20688800.7 AET2Gv20688800.7 |
High | No | 2640 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -24.981 AMFE: -0.595 GC content %: 42.008 | |
| Atauschii_AET2Gv20688800.8 AET2Gv20688800.8 |
High | No | 2555 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -24.873 AMFE: -0.587 GC content %: 42.348 | |
| Atauschii_AET2Gv20688800.9 AET2Gv20688800.9 |
High | No | 937 | OG0000189 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -27.641 AMFE: -0.553 GC content %: 49.947 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
