GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET2Gv20711300 [ AET2Gv20711300]	2D	398959122	398963605	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET2Gv20711300.6 AET2Gv20711300.6	Low	No	754	OG0070750		Get ORF Coding potential... Type: noncoding Potential: -0.122 Folding energies... MFEI: -32.586 AMFE: -0.643 GC content %: 50.663
Atauschii_AET2Gv20711300.7 AET2Gv20711300.7	Low	No	913	OG0070751		Get ORF Coding potential... Type: coding Potential: 1.223 Folding energies... MFEI: -33.078 AMFE: -0.625 GC content %: 52.903

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET2Gv20711300.6	SwissProt	2021-04-01	Q6Z7F4	1.19e-11

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).