Atauschii AET2Gv20719600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20719600 [ AET2Gv20719600] |
2D | 404123331 | 404128551 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20719600.15 AET2Gv20719600.15 |
Low | No | 467 | OG0003696 | Get ORF Coding potential... Type: noncoding Potential: -0.431 Folding energies... MFEI: -28.887 AMFE: -0.594 GC content %: 48.608 | |
| Atauschii_AET2Gv20719600.16 AET2Gv20719600.16 |
Low | No | 1225 | OG0002879 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -32.024 AMFE: -0.627 GC content %: 51.102 | |
| Atauschii_AET2Gv20719600.17 AET2Gv20719600.17 |
Low | No | 1127 | OG0002879 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -30.701 AMFE: -0.634 GC content %: 48.447 | |
| Atauschii_AET2Gv20719600.18 AET2Gv20719600.18 |
Low | No | 969 | OG0002879 | Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -27.296 AMFE: -0.597 GC content %: 45.717 | |
| Atauschii_AET2Gv20719600.3 AET2Gv20719600.3 |
Low | No | 399 | OG0070761 | Get ORF Coding potential... Type: noncoding Potential: -0.747 Folding energies... MFEI: -41.003 AMFE: -0.597 GC content %: 68.672 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20719600.18 | SwissProt | 2021-04-01 | Q7QBJ0 | 3.97e-4 |
| Atauschii_AET2Gv20719600.3 | SwissProt | 2021-04-01 | Q0CF71 | 4.83e-4 |
| Atauschii_AET2Gv20719600.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20719600.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20719600.15 | SwissProt | 2021-04-01 | Q7QBJ0 | 4.29e-8 |
| Atauschii_AET2Gv20719600.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET2Gv20719600.16 | SwissProt | 2021-04-01 | A4II73 | 9.28e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
