Atauschii AET2Gv20731500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20731500 [ AET2Gv20731500] |
2D | 412149287 | 412154232 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20731500.1 AET2Gv20731500.1 |
Low | No | 1503 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -25.715 AMFE: -0.580 GC content %: 44.311 | |
| Atauschii_AET2Gv20731500.10 AET2Gv20731500.10 |
High | No | 1341 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -25.295 AMFE: -0.694 GC content %: 36.465 | |
| Atauschii_AET2Gv20731500.11 AET2Gv20731500.11 |
Low | No | 1885 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -25.019 AMFE: -0.649 GC content %: 38.568 | |
| Atauschii_AET2Gv20731500.12 AET2Gv20731500.12 |
Low | No | 3431 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -25.150 AMFE: -0.640 GC content %: 39.318 | |
| Atauschii_AET2Gv20731500.14 AET2Gv20731500.14 |
High | No | 1619 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -26.109 AMFE: -0.640 GC content %: 40.766 | |
| Atauschii_AET2Gv20731500.15 AET2Gv20731500.15 |
Low | No | 2758 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -25.526 AMFE: -0.615 GC content %: 41.479 | |
| Atauschii_AET2Gv20731500.16 AET2Gv20731500.16 |
Low | No | 2390 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -25.565 AMFE: -0.616 GC content %: 41.506 | |
| Atauschii_AET2Gv20731500.17 AET2Gv20731500.17 |
Low | No | 1103 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -27.398 AMFE: -0.588 GC content %: 46.600 | |
| Atauschii_AET2Gv20731500.18 AET2Gv20731500.18 |
High | No | 2048 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -24.951 AMFE: -0.613 GC content %: 40.674 | |
| Atauschii_AET2Gv20731500.19 AET2Gv20731500.19 |
Low | No | 4733 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -23.634 AMFE: -0.616 GC content %: 38.390 | |
| Atauschii_AET2Gv20731500.2 AET2Gv20731500.2 |
Low | No | 3152 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.987 AMFE: -0.636 GC content %: 39.277 | |
| Atauschii_AET2Gv20731500.20 AET2Gv20731500.20 |
Low | No | 4548 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -23.566 AMFE: -0.617 GC content %: 38.215 | |
| Atauschii_AET2Gv20731500.22 AET2Gv20731500.22 |
Low | No | 2098 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -24.709 AMFE: -0.652 GC content %: 37.893 | |
| Atauschii_AET2Gv20731500.3 AET2Gv20731500.3 |
High | No | 1914 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -25.298 AMFE: -0.626 GC content %: 40.439 | |
| Atauschii_AET2Gv20731500.4 AET2Gv20731500.4 |
Low | No | 2538 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -25.445 AMFE: -0.617 GC content %: 41.214 | |
| Atauschii_AET2Gv20731500.5 AET2Gv20731500.5 |
Low | No | 2534 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -25.347 AMFE: -0.615 GC content %: 41.200 | |
| Atauschii_AET2Gv20731500.6 AET2Gv20731500.6 |
Low | No | 2505 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -25.788 AMFE: -0.628 GC content %: 41.078 | |
| Atauschii_AET2Gv20731500.7 AET2Gv20731500.7 |
Low | No | 2807 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.458 AMFE: -0.621 GC content %: 40.969 | |
| Atauschii_AET2Gv20731500.8 AET2Gv20731500.8 |
Low | No | 2627 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -24.461 AMFE: -0.665 GC content %: 36.810 | |
| Atauschii_AET2Gv20731500.9 AET2Gv20731500.9 |
Low | No | 2065 | OG0000493 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -25.172 AMFE: -0.651 GC content %: 38.644 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20731500.1 | SwissProt | 2021-04-01 | Q9M888 | 7.84e-8 |
| Atauschii_AET2Gv20731500.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERVK | |
| Atauschii_AET2Gv20731500.6 | SwissProt | 2021-04-01 | Q9M888 | 1.41e-7 |
| Atauschii_AET2Gv20731500.2 | SwissProt | 2021-04-01 | Q9M888 | 2.17e-7 |
| Atauschii_AET2Gv20731500.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERVK | |
| Atauschii_AET2Gv20731500.12 | SwissProt | 2021-04-01 | Q9M888 | 2.37e-7 |
| Atauschii_AET2Gv20731500.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; LTR/ERVK | |
| Atauschii_AET2Gv20731500.7 | SwissProt | 2021-04-01 | Q9M888 | 1.92e-7 |
| Atauschii_AET2Gv20731500.20 | SwissProt | 2021-04-01 | Q9M888 | 2.66e-7 |
| Atauschii_AET2Gv20731500.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERVK |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
