Atauschii AET2Gv20733500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20733500 [ AET2Gv20733500] |
2D | 413926550 | 413939602 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET2Gv20733500.1 AET2Gv20733500.1 |
Low | No | 1280 | OG0016039 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -29.578 AMFE: -0.664 GC content %: 44.531 | |
| Atauschii_AET2Gv20733500.11 AET2Gv20733500.11 |
Low | No | 1527 | OG0016039 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -27.800 AMFE: -0.659 GC content %: 42.174 | |
| Atauschii_AET2Gv20733500.14 AET2Gv20733500.14 |
High | No | 971 | OG0016039 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -33.388 AMFE: -0.670 GC content %: 49.846 | |
| Atauschii_AET2Gv20733500.3 AET2Gv20733500.3 |
Low | No | 1000 | OG0070792 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -32.050 AMFE: -0.908 GC content %: 35.300 | |
| Atauschii_AET2Gv20733500.32 AET2Gv20733500.32 |
High | No | 702 | OG0070793 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -31.325 AMFE: -0.558 GC content %: 56.125 | |
| Atauschii_AET2Gv20733500.37 AET2Gv20733500.37 |
High | No | 284 | OG0070794 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -24.190 AMFE: -0.559 GC content %: 43.310 | |
| Atauschii_AET2Gv20733500.4 AET2Gv20733500.4 |
High | No | 656 | OG0070795 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -24.909 AMFE: -0.689 GC content %: 36.128 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET2Gv20733500.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Atauschii_AET2Gv20733500.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Tip100 | |
| Atauschii_AET2Gv20733500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
